UFO05947.5prime Sequence
1104 bp (969 high quality bases) assembled on 2009-07-25
> UFO05947.5prime
CAGTCGACATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGGACCA
CCACCTCAGGGTCCAATCAAGTTCACCATCGCCGATACACTGGAACGCAT
CAAGGAGGAGTTCAACTTCCTGCAGGCGCAGTACCACAGCATTAAATTGG
AGTGCGAGAAGCTGTCGAACGAGAAGACGGAGATGCAGCGCCATTATGTT
ATGTACTACGAGATGTCCTATGGCCTTAACGTGGAGATGCACAAGCAGAC
CGAGATCGCCAAGCGGCTGAACACACTGATCAACCAGCTACTTCCATTCC
TTCAGGCCGACCACCAGCAGCAAGTGCTGCAGGCGGTGGAGCGGGCGAAG
CAGGTGACCATGCAGGAGCTCAACCTGATCATTGGGCAACAGATCCACGC
CCAGCAGGTGCCAGGTGGACCACCTCAGCCGATGGGCGCACTGAATCCGT
TTGGCGCCCTGGGCGCCACCATGGGCCTGCCACACGGACCGCAAGGTCTG
CTGAACAAACCGCCCGAACACCACAGGCCGGACATCAAGCCGACGGGTCT
AGAGGGGCCAGCAGCCGCCGAGGAGCGATTGCGCAATTCGGTTTCGCCGG
CCGATCGTGAGAAGTATCGCACACGCTCGCCGCTGGACATCGAGAACGAC
TCGAAGCGTCGAAAAGATGAGAAACTGCAAGAGGATGAAGGCGAGAAAAG
CGATCAAGATTTAGTCGTAGATGTTGCAAATGAAATGGAATCCCACTCAC
CGCGTCCCAACGGCGAGCACGTGTCTATGGAGGTGCGCGATCGGGAAAGC
TTGAATGGCGAGCGCCTGTAGAAGCCAAGCAGTAGTGGCATCAAGCAGGA
ACGGCCGCCCTCACGCTCCGGCTCCAGTTCGTCACGTTCCACACCCAGCC
TCAAGACAAAAGAATATGGAAAAGCCCGGGTACACCGGGCGCCAAGGCAC
GCACACGGACACCGAACGCCGCTGCTTCCGCGCCAGGCGTTATCCTAAAC
AAATGATGCCGCAGGGACCACGCCAGCCGGATATCCCGGGTGCCCGTAAT
CAAAGGCGGGCGATCTACACGTTCACGGTCGATCAGCTATGGAGGACCGC
CACC
UFO05947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gro-RF | 2975 | CG8384-RF | 520..1624 | 7..1104 | 5060 | 97.9 | Plus |
| gro-RC | 2887 | CG8384-RC | 432..1536 | 7..1104 | 5060 | 97.9 | Plus |
| gro-RD | 2908 | CG8384-RD | 453..1557 | 7..1104 | 5060 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26045468..26045663 | 386..581 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 26044443..26044626 | 203..386 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 26046732..26046908 | 737..913 | 870 | 99.4 | Plus |
| 3R | 32079331 | 3R | 26045728..26045828 | 581..681 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 26043514..26043609 | 44..139 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 26046983..26047095 | 926..1036 | 420 | 95.6 | Plus |
| 3R | 32079331 | 3R | 26044307..26044373 | 137..203 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 26046536..26046593 | 681..738 | 290 | 100 | Plus |
| 3R | 32079331 | 3R | 26043342..26043380 | 7..45 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:31 has no hits.
UFO05947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:42 Download gff for
UFO05947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gro-RA | 477..1587 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:50 Download gff for
UFO05947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gro-RD | 447..1557 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:08 Download gff for
UFO05947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gro-RD | 447..1557 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:08 Download gff for
UFO05947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26044310..26044373 | 140..203 | 100 | -> | Plus |
| 3R | 26044444..26044626 | 204..386 | 100 | -> | Plus |
| 3R | 26045469..26045663 | 387..581 | 100 | -> | Plus |
| 3R | 26045729..26045827 | 582..680 | 100 | -> | Plus |
| 3R | 26046536..26046592 | 681..737 | 100 | -> | Plus |
| 3R | 26046733..26046909 | 738..915 | 98 | -> | Plus |
| 3R | 26043336..26043379 | 1..44 | 91 | -> | Plus |
| 3R | 26043515..26043609 | 45..139 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:50 Download gff for
UFO05947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21869058..21869101 | 1..44 | 91 | -> | Plus |
| arm_3R | 21869237..21869331 | 45..139 | 100 | -> | Plus |
| arm_3R | 21870032..21870095 | 140..203 | 100 | -> | Plus |
| arm_3R | 21870166..21870348 | 204..386 | 100 | -> | Plus |
| arm_3R | 21871191..21871385 | 387..581 | 100 | -> | Plus |
| arm_3R | 21871451..21871549 | 582..680 | 100 | -> | Plus |
| arm_3R | 21872258..21872314 | 681..737 | 100 | -> | Plus |
| arm_3R | 21872455..21872631 | 738..915 | 98 | -> | Plus |
