UFO05951.5prime Sequence
1102 bp (991 high quality bases) assembled on 2009-07-25
> UFO05951.5prime
CAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAGAGGCGTAC
CAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGTGCCCCGAA
CTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGACATCCTGGA
TGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGATGCTGCTG
TTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAGCAAGATGC
CCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGCCTACGAAG
ATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCGAGGAGATG
GTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTGGAGTCCCG
TCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAAGATCGAGG
AGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGCGCCTCAAG
ATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTTCAGCGGAA
TACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACACACTGCCAA
GAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCGAAATGCAC
AACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTTCCTGTTTA
TCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTACGATATCG
ATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAGGATACAATGCTCAT
ATAGTTAAAGGATCCCAAGCATGCCTGCATATATCTAGTTCTGGTGGGAG
AGGCTCTGCTTGAGCAGGATCTATTGCGAAATAATCGCTATGCTGCTCAG
GAGGCGGAGCATCAGCTAGCCTCGACGCCCACTCTAAAAAATGACTGCCC
GTGGACATGGAGAAGCTTTACAGTCTGCCATATTGGGGGCGGCGATGGTC
GCAATCATGTGGCTGCTCACCTGGGCGAGAAGAGATCTCCATTCCATCGT
ACGAATCCTCCTCTAAGGCGAACCATATGCGAGCATGCGGTGCCAAGGCT
TG
UFO05951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..1178 | 8..1085 | 5045 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19131250 | 357..1060 | 3130 | 97.9 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 8..238 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 237..362 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:30 has no hits.
UFO05951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:56 Download gff for
UFO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 89..1173 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:30 Download gff for
UFO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 94..1178 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:06 Download gff for
UFO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 94..1178 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:06 Download gff for
UFO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19129682..19129917 | 1..236 | 98 | -> | Plus |
| 2R | 19130368..19130493 | 237..362 | 100 | -> | Plus |
| 2R | 19130554..19131276 | 363..1085 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:30 Download gff for
UFO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15017187..15017422 | 1..236 | 98 | -> | Plus |
| arm_2R | 15017873..15017998 | 237..362 | 100 | -> | Plus |
| arm_2R | 15018059..15018781 | 363..1085 | 97 | | Plus |
