UFO05952.5prime Sequence
906 bp (97 high quality bases) assembled on 2009-07-25
> UFO05952.5prime
CAATCCACATGAGTGCGCCTAGTGAGGGTGGCGCGGGAGGAGGGCCGGTG
GGCGGTGGAAGTACAGCTACAGCGCCATCAGCGCACCCGGCGGTGGCCGC
CAAGATCACCCACGTGAAATCCGACGGGGGCGGTGGGATATCCATTGCGG
GCACACCGATCCTCAACGGAGGCACAATTAAGGTGGCGTCTTCCAATCAA
GTTCAACAAACTTCCCTAGGTGGCACTCCAATTGCTCTGAATGCAGGACA
AGCGACTACGGCAGCTTCGATCCGTGCTATTGGCGCTGGTGGTCAGTCCA
CACAGGTGCGGGTGGTGATGCCAATGATCAAGCAGCTAGAGAATGTTACG
GCCACCGAAAGGACTCACATAACAGCCATACCAGCTGCTCCGGCGAGGAG
TGGGGCGAATGCATCGATCACGGTTACCAGGCCCGTAACCCATGCCACAT
ACTTGCCGCAAGCCAGTGTGACGGCCACCCAAATGGGAGGCGTTGGCGTT
GGAGTTGGCCAGCGGCTCGTCACGCCATTGAGAGCCACATCATCGGGCAC
GGTTACGCCCACAGCGCCAACAGTGCTGAACTCAACCGGAGGATTCGTAC
GCGGAGCAACAGCATCAGTGAGCAGAAGTGGAGTGGCGCTCACATCGCAA
CCATCGTCGGCTGTCATCTCGTCCAGCAACAGTGGTGCTTGGATGCAGAG
TCAGGCACAGGTGCAACTGATCCGAACCATTCATCATCCGCGCCAGCGAA
TTATAACGACATCCGCGGGGGTTTCGAATGCCAGTGTAGTGACCACTACT
CCAATGAACGCGCCAACAGCTCTTTCGTCTCACTGGCCAGCCCTTGCGAC
ACAACTTGTGACGGGACTGGTAGGAGGTCCTCAGGCTATGTGGCTACTGT
ATGCCA
UFO05952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap130-RA | 4045 | CG11006-RA | 179..1076 | 9..902 | 4030 | 96.9 | Plus |
| Sap130-RG | 4018 | CG11006-RG | 179..1076 | 9..902 | 4030 | 96.9 | Plus |
| Sap130-RF | 4015 | CG11006-RF | 179..1076 | 9..902 | 4030 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12807090..12807830 | 79..819 | 3450 | 97.7 | Plus |
| 3L | 28110227 | 3L | 12806265..12806337 | 9..81 | 365 | 100 | Plus |
| 3L | 28110227 | 3L | 12807901..12807972 | 833..902 | 185 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:33 has no hits.
UFO05952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:57 Download gff for
UFO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11006-RC | 187..269 | 1..86 | 93 | <- | Plus |
| CG11006-RC | 495..1318 | 87..905 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:15 Download gff for
UFO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap130-RF | 174..1080 | 1..905 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:21 Download gff for
UFO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap130-RF | 174..1080 | 1..905 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:21 Download gff for
UFO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12806260..12806337 | 1..81 | 95 | -> | Plus |
| 3L | 12807093..12807830 | 82..819 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:15 Download gff for
UFO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12799360..12799437 | 1..81 | 95 | -> | Plus |
| arm_3L | 12800193..12800930 | 82..819 | 97 | -> | Plus |
