UFO05954.5prime Sequence
1124 bp (1007 high quality bases) assembled on 2009-07-25
> UFO05954.5prime
CAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAATCTGCGCC
ATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGCCAGGACGA
GATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGAAACGGCTC
CACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTTCACATCTG
ACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAACGAGGTCGC
TGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACCCAACTCCA
CGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAGGCCGACGA
TCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATCCTGTACGT
AACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCATCCTGCTGC
TGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGCTCTGCCTG
GATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGGGCCAACAC
CTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGGCAATTTTG
CCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCGGCGAGTGG
AACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTGAATCGATT
TATTGCAATGCTGCCAAATTCGCAAGAGGGTTCCGTGGAGTCCACGGTGA
GCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACAAGAGCCAG
TCGGATCTGCTCCTGAAACGGGCCATTAATGCAGTGTATGGCTGGCAGGC
ATTCCGCGACTCCAATCGACTGCAATCCTGAGAATACAAGCGGGTTCTGG
TCGTCCTACAGACTGACATGGCATATTTCCTTACTACCGCGTCACCGTGG
AGAACGGCTTTAGTAATCCCCACGACTATGTGATCACCCCTGGACGAGGG
CGAACTTGGTCTGCCGGACAAGTACTTCTATGCACGATGCTGACAAGAAA
TGGTTCGTTGGCATAGCTGCCTCCTCGGACTTGCCTCCATATGGATCGTT
CACGGCAGCGATCTATTTGCCCAA
UFO05954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9634-RC | 3281 | CG9634-RC | 144..1268 | 9..1121 | 5090 | 97.7 | Plus |
| CG9634-RA | 3661 | CG9634-RA | 524..1648 | 9..1121 | 5090 | 97.7 | Plus |
| CG9634-RB | 3646 | CG9634-RB | 524..1633 | 9..1121 | 4855 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16744845..16745201 | 678..322 | 1770 | 99.7 | Minus |
| X | 23542271 | X | 16745515..16745833 | 327..9 | 1595 | 100 | Minus |
| X | 23542271 | X | 16729852..16730046 | 1032..838 | 820 | 96.9 | Minus |
| X | 23542271 | X | 16744614..16744773 | 837..678 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:37 has no hits.
UFO05954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:58 Download gff for
UFO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1547 | 1..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:52 Download gff for
UFO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1547 | 1..1032 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:12 Download gff for
UFO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1547 | 1..1032 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:12 Download gff for
UFO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16745515..16745837 | 1..327 | 98 | | Minus |
| X | 16729852..16730046 | 838..1032 | 96 | <- | Minus |
| X | 16744614..16744772 | 679..837 | 100 | <- | Minus |
| X | 16744845..16745195 | 328..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:52 Download gff for
UFO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16623885..16624079 | 838..1032 | 96 | <- | Minus |
| arm_X | 16638647..16638805 | 679..837 | 100 | <- | Minus |
| arm_X | 16638878..16639228 | 328..678 | 100 | <- | Minus |
| arm_X | 16639548..16639870 | 1..327 | 98 | | Minus |
