UFO05956.5prime Sequence
974 bp (500 high quality bases) assembled on 2009-07-25
> UFO05956.5prime
CAATCGACATGGCCAACAAGAACATGCGTAACACCACAACCAAAGTGGAG
GCCCTGATTGAGAGCTGTCGCAGCGAGGGCAAGTGGCACCGGGTCATCGA
GCTAACGGATGAACTGAAGACCGGGTCCCCGCACAATGAGTGCCTGGCCA
ACTTTCTGGTGGGGGAAGCTCGTCTGGAGAGTTACCTGGAGGAAAACGCT
CTCGCGTCAGACTCAAATTTTGGTCGCGCCAAGTCTGGATTGGCGGAGGC
CCGGCGTTTCCTTCACTTGGCTTTGGGTGAGAGTGGCCAGAAGGCGGGCA
TCGCCCTGGACGCCTATTTGCTGCTGGCCAAGCTGTGCTTTGCCTGCGGC
GAGTATGAACATAGTCTACACAATTTCGTCAAGGCATAACTCAACACGCT
TGCCGAGAAGGAGCTGACCCTTCTCATCCTGAAGATCCTTGCGGAATCGT
ATGCCATCAAGGGATTGTGTCTGGAGCAACAGACTACGAAGCCGTCATCT
AAGTTTAAGAAGGCCGAAAAGGACACGGAAATGATTAACTGTTTTGAGCG
CGCATCTGATCTGGGGCTGCTCTATCTGCAGGAATACGATCTCGTTAGTG
GAAGCAGTGGCTCGTCCAACAACTCGACAGCTGGTTCTACGTTGAATGTA
AACGCCTCTACTGTGCAGCCGTCGAGCACCAGTTTTGCGATCAGCAGTAC
AATACCGGCGAGTGGTCCAAGTGGACTGAAAATGAGCCGCATGATGGGCG
CCATCCTAGAGACCGCCCTGCAACGGGCACTCATAGTGCTTATTAATACG
GAAAAGCTTCAAGACGTCCGTCGAACAGCTATCGAATCATGCTGAACGCC
ATCGAAGCGATGGCTACTCTATCGTGCTCTCACGCTGGCCCGCCAGCTAA
CTCAGTTCCTTTGAGAGGGTCTCGGTACTATTCCTCGCCTCTTTACGGAA
ATCTGGAGTGACGCTGCTAGATGA
UFO05956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k14710-RB | 3049 | CG8325-RB | 182..1139 | 9..958 | 4075 | 95.7 | Plus |
| l(2)k14710-RA | 3079 | CG8325-RA | 182..1139 | 9..958 | 4075 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6212772..6213159 | 919..533 | 1420 | 93.3 | Minus |
| 2R | 25286936 | 2R | 6213469..6213752 | 421..138 | 1360 | 98.6 | Minus |
| 2R | 25286936 | 2R | 6213812..6213941 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 6213216..6213321 | 533..428 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:40 has no hits.
UFO05956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:01 Download gff for
UFO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 178..1096 | 9..925 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:19 Download gff for
UFO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 182..1100 | 9..925 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:26 Download gff for
UFO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 182..1100 | 9..925 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:26 Download gff for
UFO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6213812..6213941 | 9..138 | 100 | | Minus |
| 2R | 6212765..6213158 | 534..925 | 93 | <- | Minus |
| 2R | 6213216..6213327 | 422..533 | 97 | <- | Minus |
| 2R | 6213469..6213751 | 139..421 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:19 Download gff for
UFO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2100721..2100832 | 422..533 | 97 | <- | Minus |
| arm_2R | 2100270..2100663 | 534..925 | 93 | <- | Minus |
| arm_2R | 2100974..2101256 | 139..421 | 98 | <- | Minus |
| arm_2R | 2101317..2101446 | 9..138 | 100 | | Minus |
