UFO05957.5prime Sequence
1074 bp (972 high quality bases) assembled on 2009-07-25
> UFO05957.5prime
CAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCTCGCTGCGG
ATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAGGACAACAA
CCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTCCATAAACA
GCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACCAGAATCTT
AGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGCAATCTTTT
GGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCTCTCCAAGT
TCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGCGCACCGCT
CATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATCTCCGGTTC
TCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAAGTCAATCA
ACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGTTCAGTCCA
CACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACTGTCCAGTT
GTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTACGGCGCACT
ACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATTGGCTGGCC
ACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGATGGCAGGCC
GGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACGGGTTAAGT
GGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTGTGGTGGAC
TACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCCTTTGCCTC
CTTCAACGAGCACACCAATGTGACTACTGGAATTGCGTGCAGGCAGCGAC
TCGCACTGTCTTCTGTCATCAGCAGACTCCACCATTTACAAACATGCTTT
TAGATGCACGAGCAGCGCTGAAGCCAATGCCAGGAGCTAGCTGGCGATTT
GGGACTCTCTTGCACAAGATCAGGATTGGAACCAGACACGTGCATCAATA
CAGGTCTCTAGCTCATCGCGTAAG
UFO05957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RC | 2702 | CG7609-RC | 94..1089 | 9..991 | 4670 | 98.6 | Plus |
| CG7609-RB | 2699 | CG7609-RB | 94..1089 | 9..991 | 4670 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 766..127 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29743931..29744121 | 952..767 | 745 | 96.3 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:34 has no hits.
UFO05957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:04 Download gff for
UFO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 66..1044 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:43 Download gff for
UFO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1068 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:32 Download gff for
UFO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1068 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:32 Download gff for
UFO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29743905..29744121 | 767..973 | 95 | <- | Minus |
| 3R | 29744184..29744823 | 127..766 | 100 | <- | Minus |
| 3R | 29744882..29745003 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:43 Download gff for
UFO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25569627..25569843 | 767..973 | 95 | <- | Minus |
| arm_3R | 25569906..25570545 | 127..766 | 100 | <- | Minus |
| arm_3R | 25570604..25570725 | 1..126 | 96 | | Minus |
