UFO05958.5prime Sequence
1125 bp (1015 high quality bases) assembled on 2009-07-25
> UFO05958.5prime
CAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGCTGAAGCCG
GCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAGGATGAAAA
GAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGACGAGGACC
AGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGCAGGAGCCG
GATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAATTGATCAG
AGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAAGTTCATGC
GCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGCCCAATGAG
CAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCGATGACCAT
GGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGATCGCAAGC
AGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGTCTGGCGAA
ATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTACAGCTCAT
CGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAATGCCGAGG
CTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACCTGCTGAGC
GACTTTGTGGACGAGTCGGCCTATCCCCGCGTCTGTCTCTATCTGCAGTC
CTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCTGGAAACCG
CGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCATGCGACTG
GCGTTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTCAAGGAGCC
CAAGGAGCCGGCCATGCAGAAGCAGCTGGCCTTTATGCTGGCCCGCCAAC
AGATTTGCCTGGAGCTGGATGAATGGTGCCGGACTACGATGATCTCATGG
AGATCATGTCGAATGCTAATCTGAACAAGCATTTCCTCAATCTGGCTCCC
GAACTGGACATCATGGGAGCCCAAACCGCCTGGAAGACATTACAAGTCGC
ATTTGGACAACTCGCGCCTCCCGCTTGCATCCATCAGTTGAACTCTGCCA
GCAAATCTGGCGCTTAGCCTTGGAT
UFO05958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..1246 | 8..1111 | 5235 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19916267 | 8..1085 | 5085 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:23 has no hits.
UFO05958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:50 Download gff for
UFO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 135..1212 | 8..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:01 Download gff for
UFO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1217 | 8..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:35 Download gff for
UFO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1217 | 8..1085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:35 Download gff for
UFO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19915190..19916267 | 8..1085 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:01 Download gff for
UFO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908290..19909367 | 8..1085 | 99 | | Plus |
