UFO05959.5prime Sequence
1078 bp (965 high quality bases) assembled on 2009-07-25
> UFO05959.5prime
CAGTCGACATGGGGGACATGTTCCGTAGTGAGGAGATGGCACTCTGCCAG
ATGTTCATTCAGCCGGAGGCCGCGTATACCTCCGTATCTGAGCTGGGCGA
AACCGGCTGCGTGCAGTTCCGCGACTTGAATGTGAACGTGAACGCCTTCC
AGCGCAAGTTCGTCACCGAGGTGCGTCGCTGCGATGAGCTGGAGCGCAAG
ATCCGCTACATCGAGACGGAGATCAAGAAGGACGGCATCGTCCTGCCCGA
CATCCAGGATGACATTCCGCGTGCGCCCAATCCACGCGAGATCATCGATC
TGGAGGCGCATCTGGAGAAGACCGAGTCGGAGATGATCGAGCTGGCCCAG
AACGAGGTGAACATGAAGTCCAACTATCTGGAGCTGACCGAGCTGCGCAA
GGTGCTGGAGAACACGCAGGGCTTCTTCTCCGACCAGGAGGTTCTCAATC
TGGACTCCTCCAACCGAGCTGGAGGAGACAACGATGCTGCTGCTCAACAC
CGTGGCCGGCTTGGATTCGTTGCCGGTGTAATTAACCGGGAGCGAGTGTT
TGCCTTTGAGCGTATGCTGTGGCGCATCTCCAGGGGCAATGTCTTCCTCA
AGCGCTCCGATCTGGACGAGCCGCTGAACGATCCGGCCACCGGACATCCC
ATCTACAAGACCGTCTTCGTGGCCTTCTTCCAGGGCGAGCAACTGAAGAA
CCGTATCAAGAAGGTGTGCACTGGCTTCCACGCCTCGCTGTATCCCTGTC
CCAGCTCGCACAACGAGCGCGAGGAAATGGTTCGCAATGTGCGCACCCGC
CTGGAGGATCTGAAGCTGGTCCTTAGCCAGACGGAGGATCATCGTAGCCG
CGTCCTGCCACCGTGTCCAAGATCTGCCCTCGTGGTCGATCATGGTCAGA
AGATGATGCCATTTACCACACCGCTGAATCTGTTCCACATGGACGTGACC
AGAAGTGCTGGATTGGCGAGTGGTTGGGGTGCCCACCAATGAATTTGCCG
TGTCCAAAGGTCTGTTCGATGGATCTTGCTGGCAGTGGGGCAGACCATAC
CCTTCGTTTCTGACGTGATCGAACCACG
UFO05959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 3044 | CG18617-RA | 238..1304 | 9..1072 | 4810 | 97.7 | Plus |
| Vha100-2-RB | 3006 | CG18617-RB | 200..1266 | 9..1072 | 4810 | 97.7 | Plus |
| Vha100-1-RJ | 2950 | CG1709-RJ | 115..486 | 21..395 | 375 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18392337..18393205 | 992..126 | 3920 | 98.5 | Minus |
| 3R | 32079331 | 3R | 18393272..18393388 | 125..9 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 11741549..11741776 | 7..234 | 345 | 76.8 | Plus |
| 3R | 32079331 | 3R | 29132141..29132239 | 141..239 | 315 | 87.9 | Plus |
| 3R | 32079331 | 3R | 18388745..18388923 | 833..655 | 295 | 77.7 | Minus |
| 2L | 23513712 | 2L | 11742211..11742404 | 657..850 | 295 | 76.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 24..71 | 526..477 | 110 | 72 | Minus |
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4781..4828 | 526..477 | 110 | 72 | Minus |
UFO05959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:51 Download gff for
UFO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RA | 239..1261 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:26 Download gff for
UFO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 189..1211 | 1..1015 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:16 Download gff for
UFO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 189..1211 | 1..1015 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:16 Download gff for
UFO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18393272..18393395 | 1..125 | 96 | | Minus |
| 3R | 18392311..18393205 | 126..1015 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:26 Download gff for
UFO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14218033..14218927 | 126..1015 | 98 | <- | Minus |
| arm_3R | 14218994..14219117 | 1..125 | 96 | | Minus |
