UFO05960.5prime Sequence
1089 bp (969 high quality bases) assembled on 2009-07-25
> UFO05960.5prime
CAGTCGACATGAGCGTGCTGCCGTTTGTGCGCGGTGTGGACTTTACGAAA
AATGATTTCAGCGCAACATTCCCCAGCTCCATGCGGCAGATGTCGCGGGT
GCAGTGGCTCACACTGGATCGCACGCAGCTGGCGGAGATTCCCGAGGAGC
TAGGCCACCTACAGAAGCTGGAGCACCTGTCGCTGAACCACAACCGACTG
GAGAAGATCTTTGGCGAGCTGACAGAGCTGTCCTGCCTGCGATCCCTCGA
CCTGCGGCACAATCAGCTGAAGAACAGCGGCATACCGCCGGAGCTGTTTC
ACCTGGAGGAGCTGACCACGCTGGACCTGTCGCACAACAAACTGAAGGAG
GTGCCCGAGGGTTTGGAGCGGGCCAAGAACCTGATAGTCCTCAACCTGAG
CAACAATCAGATCGAGAGCATACCCACGCCGCTGTTCATCCATCTAACGG
ATCTGCTGTTCCTGGATCTGTCGCACAATAGACTGGAGACACTGCCGCCG
CAGACGCGACGTCTGATTAATCTGAAAACCCTGGACCTATCGCACAATCC
GCTGGAGCTGTTTCAACTGCGGCAATTGCCCTCGCTGCAGAGCTTGGAGG
TCCTGAAGATGAGCGGCACGCAGCGCACGCTCCTCAATTTTCCCACTAGC
ATAGACAGTTTGGCCAATCTCTGCGAACTGGACCTGTCGCACAATTCGCT
GCCCAAGCTGCCAGACTGCGTCTACAATGTGGTCACTTTGGTGCGACTGA
ATCTGAGCGACAACGAGCTAACCGAACTGACTGCCGGTGTAGAGCTTTGG
CAGCGTCTGGAGTCGCTGAATCTGTCGCGGAATCAATTGGTTGCGCTGCC
GGCTGCCCTCTGCAACTACCAAAGCTGCGACGATTGCTGGTGAACGACAA
AAGCTAACTTCGAGGGGCATCCCCTCGGGCATCGGCAACTCGGAGCTCTG
GAAGTGGTTTTTCTGGCAGCCACACCTGCTGGGAAATGGTTGCCGAGGAC
TCTGCCGAATGCGGTGCTTGGAGCAGCTCACTTGAGCTGCATCGCTATAC
TGCCCGATGCATCACCTGCTGAAGCTAAACAGTGACTGG
UFO05960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fliI-RA | 4827 | CG1484-RA | 154..1227 | 9..1071 | 4780 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21340111..21341011 | 63..960 | 4235 | 98.8 | Plus |
| X | 23542271 | X | 21339894..21339948 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:19 has no hits.
UFO05960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:52 Download gff for
UFO05960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fliI-RA | 91..1143 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:02 Download gff for
UFO05960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fliI-RA | 146..1198 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:40 Download gff for
UFO05960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fliI-RA | 146..1198 | 1..1049 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:40 Download gff for
UFO05960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21339886..21339947 | 1..62 | 93 | -> | Plus |
| X | 21340111..21341101 | 63..1049 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:02 Download gff for
UFO05960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21210913..21210974 | 1..62 | 93 | -> | Plus |
| arm_X | 21211138..21212128 | 63..1049 | 97 | | Plus |
