UFO05962.5prime Sequence
1125 bp (1006 high quality bases) assembled on 2009-07-25
> UFO05962.5prime
CAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTCAGCAGATC
GAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAGCTGCAAAT
GCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCAGGATCCCG
TTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGCTGAACGCC
CAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGACATCGATGT
GGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGATGTACGACT
TTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGGGCAGTCCA
GATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGCCAGAACTC
CAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGCTCAGATCC
AGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCGGTATTATT
GGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCGGGTGGCGT
GGCCGATAAGGACGGACGCTTGCGCTCGGGCGACCACATCCTCCAGATTG
GAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTGCCGTGCTG
AGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCCGTTGAGCA
GAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGCTGTGGTGC
CCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACCTCATATCT
ACCGGCTATCCGGAAATCTTTGGCGAGAGCTCCACGGCCTCCACTCCGCA
GACCACCACGGAAGACGATCGTTTCGTTTATCGCGGCGAGACATCAATGC
TTATTGATCCAAACATCGACCTAGAGAATTGCTTGCCCTTCCTGAAACGG
AGAGCTTCAGGTGGAGCTGAAGAAGGATGCCACGGCCTGGCATCACATTG
CCGGCTATGTGTGGTGAGAAAGAAAGAGCTGTCTGGCATTTTCGTAAAGA
GCGGGTCGCCCGGTCAGCCACCGGACTGATGTCGCATCCGGGTCACGATC
GCATCATGAGTGACGCAGTCCCTCA
UFO05962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..1366 | 9..1107 | 5190 | 98.6 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..1394 | 9..1107 | 5190 | 98.6 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..1396 | 9..1107 | 5190 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1800207 | 9..1064 | 4940 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:34 has no hits.
UFO05962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:10 Download gff for
UFO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 249..1378 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:32 Download gff for
UFO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 285..1414 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:08 Download gff for
UFO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 285..1414 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:08 Download gff for
UFO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799143..1800272 | 1..1120 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:32 Download gff for
UFO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799143..1800272 | 1..1120 | 97 | | Plus |
