UFO05963.5prime Sequence
1116 bp (993 high quality bases) assembled on 2009-07-25
> UFO05963.5prime
CAGTCGACATGTCGGCTAACGAAATGGCGCTTGTGAAAATCTGCATATTT
GCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAAGGCGCAGGAGTCGAG
AGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCGTGGGTCCTGGCCATC
CGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGTGATCCCGTCCAGGAG
GCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGCGGAGAAGGAGTACGA
GCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCTATCCGGACAGCAAGC
AGTGCGACAAGTACTACGCCTGCCTGGATGGTGTGCCCACGGAGCGACTG
TGCGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAGGAGAAGTG
CGATCTGCCCTACAACATTGACTGCATGAAGCGGAGCAAGCTACAAACAC
CTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGATACTTTGGCCACGAG
AAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGTGGATGGTCAGTTCAA
TATGATTACCTGCCCGGCTGGACTGGTCTTCAATCCCAAGACGGGCATAT
GTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGCAAGTCGGAGGATGTC
TTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCATCGCAGTGACACATCC
CCGCTACGCCGATCCCAACGATTGCCAGTTCTTCTACGTCTGCGTCAACG
GAGATCTGCCCAGGCGAAACGGATGCAAACTGGGCCAGGTCTTCGACGAG
GAGAAGAGACCTGCGACTGGGCACGCAAGGTGCCAGATTGTGCCGACTGG
TACAAGGATCGTCTGACCGACAAGGAGCTGGATGAGCTGGAGAACCCGAA
GCTCGAGACCACGACCACCAAGAGGCCGCCACGTGTCCGCGGTCAGTCGA
GGCGCAGCCCCAGCCGAAGCGAGTGAAACCGAGCAGGTAGGAGAGAAGGA
GGAAGGAGGAGAAGGCAGCCTTTCTAGACCATCCGTTTGGCGGCGGGGCC
CGGTTAGTGTCATAATCATAATCTATCCTATTCTAATTACGACTAGCCTA
GAGATCCTGGTCTGGA
UFO05963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-B-RA | 1149 | CG4778-RA | 55..1070 | 9..1016 | 4825 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10038218..10038614 | 445..840 | 1935 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10036817..10037074 | 69..326 | 1290 | 100 | Plus |
| 2L | 23513712 | 2L | 10038692..10038834 | 840..981 | 620 | 97.2 | Plus |
| 2L | 23513712 | 2L | 10037161..10037279 | 326..444 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 10032893..10032955 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:46 has no hits.
UFO05963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:11 Download gff for
UFO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 47..1042 | 3..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:13 Download gff for
UFO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 51..1046 | 3..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:45 Download gff for
UFO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 51..1046 | 3..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:45 Download gff for
UFO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10032889..10032953 | 3..69 | 94 | -> | Plus |
| 2L | 10036818..10037073 | 70..325 | 100 | -> | Plus |
| 2L | 10037161..10037279 | 326..444 | 100 | -> | Plus |
| 2L | 10038218..10038614 | 445..840 | 99 | -> | Plus |
| 2L | 10038693..10038857 | 841..1002 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:13 Download gff for
UFO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10038693..10038857 | 841..1002 | 94 | -> | Plus |
| arm_2L | 10038218..10038614 | 445..840 | 99 | -> | Plus |
| arm_2L | 10032889..10032953 | 3..69 | 94 | -> | Plus |
| arm_2L | 10036818..10037073 | 70..325 | 100 | -> | Plus |
| arm_2L | 10037161..10037279 | 326..444 | 100 | -> | Plus |
