UFO05964.5prime Sequence
1132 bp (1006 high quality bases) assembled on 2009-07-25
> UFO05964.5prime
CAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCAGTTTCATG
GACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAGGTCTTCGG
CGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCACTGGTCGGG
ACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGCGTGCGCTG
GAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCAAAGAGCAC
TGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGTAACAGACG
ACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCACGCCCGCC
ACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACCGGCAGGTC
CACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCCATCCCTGT
CGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTCGCCTGTTG
GAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTATCACTTATC
ACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTCGCGCAGCT
TACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAGGTGGGGGA
TTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGATGAGAGCTT
TGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGAAATCTCCT
GGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCACACAGGCG
TTGAAGAAGATTGCCGCACCAACATCCGAGATAGAAACCTCGGTGTCCAA
TTCTGTCTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTACTTCCAGA
CGCGTTCGGAAAATATATGGAACATTGTGAGCAATAGCAGCCCGAATCGT
TCGCGAACAACAACGCTATTGGAACCAGAAAGTAACGTGACACTGGATCG
GTGGCGAGAAAGACCCCACAGCAGAACAATAAAAACATACCTAAAACGAT
GCCATACTGGCTCGATCTCGACGCATCTTATGCTAAAAATGCAAAGGATC
GGATGGACTGGCCTAAAAGACAGAATGGCTGA
UFO05964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spd-2-RA | 3686 | CG17286-RA | 49..1154 | 9..1104 | 5100 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16594064..16594821 | 850..93 | 3790 | 100 | Minus |
| 3L | 28110227 | 3L | 16601731..16602488 | 850..93 | 3640 | 98.7 | Minus |
| 3L | 28110227 | 3L | 16593852..16594002 | 998..851 | 630 | 96 | Minus |
| 3L | 28110227 | 3L | 16601572..16601669 | 948..851 | 475 | 99 | Minus |
| 3L | 28110227 | 3L | 16594882..16594966 | 93..9 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 16602547..16602632 | 94..9 | 325 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:47 has no hits.
UFO05964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:13 Download gff for
UFO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 70..1171 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:24 Download gff for
UFO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 42..1143 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:30 Download gff for
UFO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 42..1143 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:30 Download gff for
UFO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16594882..16594970 | 1..93 | 95 | | Minus |
| 3L | 16593825..16594002 | 851..1024 | 95 | <- | Minus |
| 3L | 16594064..16594820 | 94..850 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:24 Download gff for
UFO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16586925..16587102 | 851..1024 | 95 | <- | Minus |
| arm_3L | 16587164..16587920 | 94..850 | 100 | <- | Minus |
| arm_3L | 16587982..16588070 | 1..93 | 95 | | Minus |
