UFO05968.5prime Sequence
1106 bp (984 high quality bases) assembled on 2009-07-25
> UFO05968.5prime
CAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGC
GCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCCAGCAAGTG
CACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTCCAAGGAAT
GTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCCAAAAGGTG
CCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATGGTTACTCA
GGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCTGAAGGAGG
TCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCCAGAAGGAG
TGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAGGCCCTGGC
CTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACTTTGCAACA
GTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTGGTCTTGAT
GGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAGTTGGCCAT
GCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTCCCGCCTGA
TGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGGAAACGATG
CTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGTGCCAACAT
TGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAAGCACTTGA
CCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCAGATATCAC
CAGCATGAAGAGGAAAAGCAACCGCAAGAAGCCTTAGTTGCCTTGGATGC
CGGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTACAGCACCTTC
GCGACGTCTTGGTGGCCAACACCACTGAAACGGAGTTCAAGCAAGGTTAT
GGAAGGATTCCGGCAAGCAGTCAAAGGGATTCCAGGACGGCTGCTTTAGC
ATTGTTGACCACTACCTACCATGGTGATTACGAGAACTCCTGGTCAGCAC
GTAATGCCATGGGAGCCTGGCTGCCATGCATCGGCCATTGCGAAGACTCG
CCCTCC
UFO05968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap-r-RA | 3440 | CG12070-RA | 130..1200 | 9..1085 | 4950 | 98 | Plus |
| Sap-r-RB | 3349 | CG12070-RB | 87..1109 | 57..1085 | 4710 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30885954..30886547 | 1015..420 | 2775 | 98.5 | Minus |
| 3R | 32079331 | 3R | 30886622..30886907 | 419..134 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 30888661..30888740 | 136..57 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 30888884..30888933 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:28 has no hits.
UFO05968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:16 Download gff for
UFO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 141..1188 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:34 Download gff for
UFO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 130..1177 | 9..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:06 Download gff for
UFO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 130..1177 | 9..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:06 Download gff for
UFO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30886622..30886904 | 137..419 | 100 | <- | Minus |
| 3R | 30888661..30888739 | 58..136 | 100 | <- | Minus |
| 3R | 30888885..30888933 | 9..57 | 100 | | Minus |
| 3R | 30885911..30886547 | 420..1059 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:34 Download gff for
UFO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26711633..26712269 | 420..1059 | 97 | <- | Minus |
| arm_3R | 26712344..26712626 | 137..419 | 100 | <- | Minus |
| arm_3R | 26714383..26714461 | 58..136 | 100 | <- | Minus |
| arm_3R | 26714607..26714655 | 9..57 | 100 | | Minus |
