UFO05972.5prime Sequence
1093 bp (990 high quality bases) assembled on 2009-07-25
> UFO05972.5prime
CAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTTGCGCTGCC
AACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTTATTTTTAA
AACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCTAAATGTAG
CTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTTACCGCCAA
GTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACTCAGCTCGT
GTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAGGGAAGCGG
CTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACCGACACGAC
GAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTGACCCACGT
GCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAATTGCCTGG
AGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTTCCTCATCC
TCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTTAACACTGG
GAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGCCCCACTGT
CTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGCCCCTAAAC
ACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGACACAAAACT
ATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCGCATCACGG
GCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACATCAACGTG
ACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCTTCAAACGT
TAGCAATCCAGGAACGAATCTCAGACAGTAATTTGTTTCTGCAGAAAGTA
GAAATCTTAAAAACACATTAAACACATTAAAGCCATGCGTACGGACAGGT
ATCACTGCTTATGGTGCGCAAATCGAAACCCTATGAGATGTAGACACTGT
CCACTACACTGTACCCAATATGTGGTGACTCATGGAGAGCACTGCGAGCC
ATGATCTTGCGGCCCAACAAAGAGATAACGAGACATGAGAAAT
UFO05972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbr-RF | 4153 | CG11371-RF | 633..1727 | 7..1073 | 4770 | 97.2 | Plus |
| dbr-RE | 3454 | CG11371-RE | 243..1337 | 7..1073 | 4770 | 97.2 | Plus |
| dbr-RD | 3789 | CG11371-RD | 269..1363 | 7..1073 | 4770 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 68084..68797 | 278..984 | 3205 | 98.9 | Plus |
| 2L | 23513712 | 2L | 67623..67765 | 7..149 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 67892..68023 | 147..278 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:30 has no hits.
UFO05972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:09 Download gff for
UFO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RB | 515..1522 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:06 Download gff for
UFO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RD | 265..1272 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:38 Download gff for
UFO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RD | 265..1272 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:38 Download gff for
UFO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 67619..67762 | 1..146 | 97 | -> | Plus |
| 2L | 67892..68023 | 147..278 | 100 | -> | Plus |
| 2L | 68085..68816 | 279..999 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:06 Download gff for
UFO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 67619..67762 | 1..146 | 97 | -> | Plus |
| arm_2L | 67892..68023 | 147..278 | 100 | -> | Plus |
| arm_2L | 68085..68816 | 279..999 | 98 | | Plus |
