UFO05973.5prime Sequence
1095 bp (984 high quality bases) assembled on 2009-07-25
> UFO05973.5prime
CAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGAAGATGCGC
AGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGATCGGCCGG
TTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGTGGCCAACA
AGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCCTAGGCGAT
CAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAAAAGCTCCA
AGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCGCAAGTCTC
GCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGCGACCGCAC
CGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCCTCAGATGC
CATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGAGCTTCTCG
AGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAGACGAGATC
CTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGATGCATCGGC
CAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTCAACTACTA
TCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAATCCAAAAG
AAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAGATCGGGGA
TGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGCGAGGGAGG
AGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGGAGGCTCCA
CCACGAAAAGCTAAGAGCCCCATTATTTTTAACAGACGCGAGAAGACACC
CGAAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCGCCAGGAGGAGC
GGGAGGAGAGAGCCCCAAAAAGATTCTTCGGCTGACAGGCCAAGAGACCG
GTCTGAAAGGCGATCGGTGCATGACGTCTCGATCAAGCCCAACGCCGGCA
GATCGTCGCAACGCACAAAGGAGCTCTTATGTGCGACCATCGGCGACGAC
GACCCGAGCCACAGAGCAGTCAAGAGAGGCACCGGAAACGACGCT
UFO05973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nab2-RA | 3490 | CG5720-RA | 162..1277 | 7..1095 | 4845 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24317138..24317842 | 975..276 | 3280 | 99 | Minus |
3R | 32079331 | 3R | 24317896..24318121 | 276..51 | 1130 | 100 | Minus |
3R | 32079331 | 3R | 24318215..24318258 | 50..7 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:07 has no hits.
UFO05973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:22 Download gff for
UFO05973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5720-RA | 157..1237 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:23 Download gff for
UFO05973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nab2-RA | 156..1236 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:49 Download gff for
UFO05973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nab2-RA | 156..1236 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:49 Download gff for
UFO05973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24317037..24317841 | 277..1062 | 96 | <- | Minus |
3R | 24317896..24318121 | 51..276 | 100 | <- | Minus |
3R | 24318215..24318264 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:23 Download gff for
UFO05973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20142759..20143563 | 277..1062 | 96 | <- | Minus |
arm_3R | 20143618..20143843 | 51..276 | 100 | <- | Minus |
arm_3R | 20143937..20143986 | 1..50 | 94 | | Minus |