UFO05974.5prime Sequence
1155 bp (1029 high quality bases) assembled on 2009-07-25
> UFO05974.5prime
CAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCATCGGAGCAGTCG
CAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAGAGTGTTTACCT
GGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGTGACGGCCGCCG
CGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACACCTGCCGCCTC
ACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTGGAATTCTTTAA
CACCACCGCCGAAGATTACCATGTGATATTCACGGCGAATGCCACCGCTG
CTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCTCTGGTGAGTTT
CACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATGCGGGAAAGGGT
CCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAATCTCTGGCGGAA
AGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAAAAACAGGAAAC
TCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGTTACAAAATCCC
ACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGCCAAGCCGGGAA
AAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATATGCACAACGAT
TACTATATCTGCCTGGATGCGGCGTCTTTTGTGGCCACCAGTCCGTTGGA
TCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTTTCTACAAGATCT
TCGGTTATCCCACGGGCGTGGGAGCCCTGCTCGTGAGTCGACGAGGAGCC
GAGGTCTTCCAGAAGCGCCGCTTTTTTGGCGGTGGTACCATCAACTACGC
ATATCCGCATGCCATGGATTACCAGCTGAGAGAGACCTTCCATCAGCGCT
ACGAGGACGGCACCCTGCCATTCCTCTCATTGTCGGGTTGCTCGAGGGCT
TTCGACGCTGGAGAGATTGGTGCCCAGAACGGACGAGTTTAGCACCATGG
AGAGGATTTCCAGACACGTCTTTGGTCTGGCAGTATTCTGGGAGGATCAG
CTGGCGCCAGCTGCATCATCCCATGGGTGAGCCCTCGTGGAGCGTGTACA
ATAATGGCTACCAAGACAATTCCGCAGTGCATCTGGCTTTACGTGCACTG
AATCG
UFO05974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mal-RB | 3209 | CG1692-RB | 578..1698 | 7..1123 | 5285 | 98.6 | Plus |
| mal-RA | 2749 | CG1692-RA | 118..1238 | 7..1123 | 5285 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20430744..20431526 | 233..1013 | 3815 | 99.7 | Plus |
| X | 23542271 | X | 20430398..20430548 | 82..232 | 755 | 100 | Plus |
| X | 23542271 | X | 20430252..20430327 | 7..82 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:29 has no hits.
UFO05974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:23 Download gff for
UFO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 568..1697 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:48 Download gff for
UFO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 114..1243 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:26 Download gff for
UFO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 114..1243 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:26 Download gff for
UFO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20430248..20430326 | 1..81 | 95 | -> | Plus |
| X | 20430398..20430548 | 82..232 | 100 | -> | Plus |
| X | 20430744..20431526 | 233..1013 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:48 Download gff for
UFO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20301275..20301353 | 1..81 | 95 | -> | Plus |
| arm_X | 20301425..20301575 | 82..232 | 100 | -> | Plus |
| arm_X | 20301771..20302553 | 233..1013 | 99 | -> | Plus |
