UFO05975.5prime Sequence
1064 bp (970 high quality bases) assembled on 2009-07-25
> UFO05975.5prime
CAGTCGACATGAAGGCCAACAGCTGGATGTGCCTGCTGGCGCTGCTTCTC
GCCTGGCAGCTGCGAGCGGAGGAGCTCCAAGGGCCCAACATTGATGGTAC
GGGCAGCAGTTTGGGTTCGGCCACAGGTACGGGTACGGGAACGGGATTGG
GCACGGGAACAGCCACGCCAACGCTGCCCAATGAGCCCTCCACCCAGGCG
GAGGCGGAGGAGGTGACCACGGCGGAATCAGAGTCGCGGGTTCCGTCGGA
AAGCAACGAACGCAAGGCAGACAAACCCAAGGAGTCCACAAAGTTTGCTT
CCAGGACGAAGGTTATGCCGGCTTCCCTGTTCGAACGCCTGTGGAACGAA
AGTCTGATCAGGCGGCAAAAGCTGAAAGCCGAGATCGAGCGCATCGAAGC
CAAACGCAAATCCACTGAAGTGTTAGAACTTACCCCAGACCAAATAGAAG
CTCAAACCGTGTACGACAACGCAATGGACATGTTGGCCAAGCCAAGCACG
GATAAGCGAGTAGCCATGATTTTGCTTAAGAAGGCTGCTGCATTTAATCA
CCTCAAGGCGAGGGCGGAACTAGCCTGGGCCGCCCTACTGGGTCAATGGA
TGGACTTTGATTTCAACCATGCTGTCGATGAGTTTGAGAGTCTGGCCAAC
GAAGGCGTCCCAGAGGCTCACATGGGCCTGGGATTCCTTTATTCGGTGGG
CGTTGGCGGTAAAAATGTAAGCCAGCCCCTGGCACTGATCCACTATAGCC
TGCTGCCCTCGGTGATAATACTCCGGCGCAATGGCCATGGGGTATCGCTA
TCTTTATGGCATCAATGTGCCCATTAGCTGTGAGAAGGCGCTGATCCACT
ACAAGCGAGTAGCCAAAAAAGTGGCTTCCAAGATACCTTCGTTAGTGGGC
CGGTTGTGCATCGGTAGACTGCTGGATGACCTAGAGAATCCCGGCAGTTC
GAAACTGGAGATCTTCGACTATTACAACTCTGGCGATAGGCGACATCAGT
CGCAGTGGGATGGTCAGTGTACTATCAGGGCGCAGTCACGGAGCAAGATC
ATCATGCCGTGAAA
UFO05975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 3286 | CG10221-RB | 644..1707 | 9..1054 | 4765 | 97.6 | Plus |
| Hrd3-RA | 3022 | CG10221-RA | 380..1443 | 9..1054 | 4765 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23756612..23757145 | 977..449 | 2290 | 97 | Minus |
| 3R | 32079331 | 3R | 23757197..23757638 | 450..9 | 2210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:58 has no hits.
UFO05975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:24 Download gff for
UFO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-RA | 492..1564 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:42 Download gff for
UFO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 371..1443 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:54 Download gff for
UFO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 371..1443 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:54 Download gff for
UFO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23756522..23757143 | 451..1054 | 95 | <- | Minus |
| 3R | 23757197..23757646 | 1..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:42 Download gff for
UFO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19582244..19582865 | 451..1054 | 95 | <- | Minus |
| arm_3R | 19582919..19583368 | 1..450 | 99 | | Minus |
