UFO05977.5prime Sequence
1119 bp (1013 high quality bases) assembled on 2009-07-25
> UFO05977.5prime
CAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATGGAACTGGA
CTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAGGCCCTGAC
CTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCTTGAGAATG
GTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCGATTTGCAC
GGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAGCTGCGCGA
CAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCCCCGGGAGC
GGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCGTCGTTCGG
GTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAATACCCAGCA
CATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGAACTGTATG
CGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATAATCAATCG
TTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATTCGCGAGAA
GGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTTCTTCCACC
CAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGTTGGCCAAC
ATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAGTTCCTGCG
CACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCTGCGTGCAG
AGCTACTGATGGCCTTACACGATCTCGAGGTGCAGGAGATCATCTCGATA
GATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATAAGGAGAAG
AATGTGGACATTAAACGTTCACGGGAGCTCCAGGGATTTCTTGACACATC
AAGCGCGCTCAGGAGCAGTTCTGGGCGATCTGTCCATGACTTTGTGCGAT
CCGTATGCCATCACTTTTTGGCCACGTCGGCCATCAGAAATGCATCACTG
ATCAACACGAGGGCATGCCGCGTGACAATCAGAAACTCATTCTGGTGGTT
GAGAAATGTTGCTGGGCCTGGATGCCTGGGGGATGATCGATCGCAAGACT
TAGGACTCACTTGTATGGC
UFO05977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..1181 | 8..1101 | 5055 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7727162..7728080 | 1044..134 | 4125 | 98.4 | Minus |
| X | 23542271 | X | 7728152..7728284 | 140..8 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:23 has no hits.
UFO05977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:25 Download gff for
UFO05977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 32..1153 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:08 Download gff for
UFO05977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 71..1192 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:26 Download gff for
UFO05977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 71..1192 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:26 Download gff for
UFO05977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7727092..7728073 | 141..1109 | 97 | <- | Minus |
| X | 7728152..7728288 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:08 Download gff for
UFO05977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7621125..7622106 | 141..1109 | 97 | <- | Minus |
| arm_X | 7622185..7622321 | 1..140 | 97 | | Minus |
