UFO05978.5prime Sequence
1069 bp (919 high quality bases) assembled on 2009-07-25
> UFO05978.5prime
CAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGATGATCGCG
GAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTACCTGCAATC
TTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGAGGTGTGCA
TAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGGGAGAGTCG
CAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGACACCATCGA
GGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGTGTACATCT
TCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCGGTCCTCCG
GAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACGAGTGCCGT
GCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCACACCGCGTC
CGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGGAATGGGAG
CTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCCACTGTTTC
CACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGGAACGGGAG
TGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAAGTGTTCCC
GCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGCGAGTGCAT
CGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGATGGCAGCG
ACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAAAACCGGGC
CACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCGCAGTATG
TGCTCGTGCAGAACGTGCAACAGACTCAGCAGGTCGTGCCCCGTAGATGC
AGCAGCAGCACGCAGCAGCAACAGCACAGCGCAGCAGCACACACATGTCA
TTGTTTGGGACACACGCACGCGCTCACGCATGGTGACATCGTGAGATGCG
CTGCTGGCCAACGAAGATGATGCGAAGCATCACCACTGCCGCACAAAGAT
GCCAAGCAACGCAGCACAA
UFO05978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6495-RA | 2581 | CG6495-RA | 387..1351 | 5..961 | 4525 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10761825..10762318 | 152..645 | 2470 | 100 | Plus |
| 2L | 23513712 | 2L | 10761502..10761652 | 5..155 | 740 | 99.3 | Plus |
| 2L | 23513712 | 2L | 10762525..10762644 | 645..764 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 10762716..10762879 | 765..926 | 600 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:13 has no hits.
UFO05978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:26 Download gff for
UFO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 353..1332 | 1..977 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:17 Download gff for
UFO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 384..1363 | 1..977 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:23 Download gff for
UFO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6495-RA | 384..1363 | 1..977 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:23 Download gff for
UFO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10761499..10761650 | 1..153 | 98 | -> | Plus |
| 2L | 10761827..10762318 | 154..645 | 100 | -> | Plus |
| 2L | 10762526..10762644 | 646..764 | 100 | -> | Plus |
| 2L | 10762716..10762932 | 765..977 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:17 Download gff for
UFO05978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10761499..10761650 | 1..153 | 98 | -> | Plus |
| arm_2L | 10761827..10762318 | 154..645 | 100 | -> | Plus |
| arm_2L | 10762526..10762644 | 646..764 | 100 | -> | Plus |
| arm_2L | 10762716..10762932 | 765..977 | 91 | | Plus |
