UFO05979.5prime Sequence
1110 bp (995 high quality bases) assembled on 2009-07-25
> UFO05979.5prime
CAGTCGACATGGAAAAATCCAGCTTAACGGAGAAGAATCACACCCAAGTG
TACAATGACACAACGAAGCCAAAGAAGCCCAAGCGTCGCGACAAGAGCGA
TCTGGGTCCGGATTTTGTGGCGCCCGACGGGGGATGGGGCTGGGTGGTCT
GTCTGGCAGCCGGTTTGAATAACTTCTTCCTTTTCCCGGCTCTGCAGCAG
TATGGCCTGATCTACAGGGTGCGGATGCAATCGCTGGGCTTCGATGCCAA
GCAAACCACGACCATTGTGAACGTGGTGATGGCAATCTCCTCGCTAGTGG
GCATTGTCAATGGCGCCATGTTCCGGCGGTTCACATTCCGTCAGGTGGCC
CTGACCGGCACCAGTCTGGCCTTCCTGGGCGTCTTCTTGTCGGCCTTTTG
CACCACCTTCTGGCAGTATATCATCTGTCTGTCGGCGATATTTGGTATCG
GTTTGGGTCTTGCCATGGCCGCCACCTCACTGGCGGTCAATACGTACTTC
AAGCTGAAGAGGCGTCGTGCCACGGGTTTCTCGTGGACGATCACTGGCCT
GGGACCCATATTCTTTCCGCAGGTGTCTACCGTCCTGTTGGGCTACTATG
GTGCCCAGGGCACCATTCTGATCTATGCTGGAATCGCCATGAATGCCATT
CTCTGCGCTTTGACCCTGCAACCCGTACTTTGGCATGTGAAGAAGCCCGA
AAAACCAGTTCACAATACAATCGAGGGAATTGCCGAGACGGAGAAGCTGC
AACCAGAACTTTTGGAGGCCAATGGCAATCTGTTGTCGCCCAGCAATGAT
CCGTGGAAGGATTACGAGTGCAAGTACTGTCAGTATCAGAAACGTTCTAA
GCGAGGCCTTTTCTCGTCCCAATACCTCTTTCAATGTCGATGATCCCGAG
AGGCCGGGGTACGAGATCACCGAGCCAGGAACTCCCATGTTGGCTCGCGC
ATGACGTTGCTCGGTCGAGCTCTCCTGACTCGGAGAGCGCGGGGAGGAGC
TCGCTCTCGCACTCGTCCAGCTCTGATGCGTCAGTTCATCAAAGTCTGAG
AATCTCGATAGACTGACAGAATCGTCATGACAGGGTCAGAACTCATCGTG
CGATGTAAAG
UFO05979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 3414 | CG8062-RB | 469..1561 | 9..1087 | 5025 | 98.2 | Plus |
| out-RA | 2902 | CG8062-RA | 469..1561 | 9..1087 | 5025 | 98.2 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..439 | 90..148 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19312436..19313230 | 1081..300 | 3250 | 97.4 | Minus |
| X | 23542271 | X | 19313525..19313689 | 173..9 | 825 | 100 | Minus |
| X | 23542271 | X | 19313311..19313438 | 301..174 | 640 | 100 | Minus |
| X | 23542271 | X | 19303662..19303720 | 148..90 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:19 has no hits.
UFO05979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:28 Download gff for
UFO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 421..1533 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:23 Download gff for
UFO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 421..1533 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:34 Download gff for
UFO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 462..1574 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:34 Download gff for
UFO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19312416..19313229 | 301..1097 | 97 | <- | Minus |
| X | 19313312..19313438 | 174..300 | 100 | <- | Minus |
| X | 19313525..19313693 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:23 Download gff for
UFO05979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19206449..19207262 | 301..1097 | 97 | <- | Minus |
| arm_X | 19207345..19207471 | 174..300 | 100 | <- | Minus |
| arm_X | 19207558..19207726 | 1..173 | 97 | | Minus |
