UFO05982.5prime Sequence
1098 bp (982 high quality bases) assembled on 2009-07-25
> UFO05982.5prime
CAGTCGACATGTCCTTCGCTCAGTTCTTTGTCGCCTGCTGCCTGGCCATC
GTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGTCCACCTCT
ATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCGGAAGGTGT
GCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGAAGTCCTAC
ATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGACCTGTTGAA
GAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCGTTTCGGAA
AACGTCGTGCAGGCTTTCGAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG
GAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGT
GTAGAAACTGCCCGGATTCGTCGTGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGTGACACTATCCCATAT
CACCAGCTCACCGTCTTTCATTGCATACGAAATCGATGACATTCATCAGG
CGGCAGATGTGAATAAGCGATAACTTGTGCTTATTTTCTTACGTCTTAAA
AGCGTAATATTCACTGACGACTGTTAGTTAATGGACACTGACTGAATG
UFO05982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ms-RB | 908 | CG6440-RB | 114..414 | 8..308 | 1505 | 100 | Plus |
| Ms-RC | 1065 | CG6440-RC | 131..431 | 8..308 | 1505 | 100 | Plus |
| Ms-RA | 925 | CG6440-RA | 131..431 | 8..308 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24342828..24343039 | 8..219 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 24343102..24343191 | 219..308 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:48 has no hits.
UFO05982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:19 Download gff for
UFO05982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dms-RA | 123..439 | 1..317 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:50 Download gff for
UFO05982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ms-RA | 125..441 | 1..317 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:23 Download gff for
UFO05982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ms-RA | 125..441 | 1..317 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:23 Download gff for
UFO05982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24342819..24343039 | 1..219 | 98 | -> | Plus |
| 3R | 24343103..24343191 | 220..308 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:50 Download gff for
UFO05982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20168541..20168761 | 1..219 | 98 | -> | Plus |
| arm_3R | 20168825..20168913 | 220..308 | 100 | == | Plus |
