UFO05983.5prime Sequence
1037 bp (946 high quality bases) assembled on 2009-07-25
> UFO05983.5prime
CGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGCCGTTGAATG
CTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCTGCCGCTGGA
GCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACCAGGATTAGG
ATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAGCTCAGGCAC
ACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCGGCTGCCATG
CCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGGTGCCATGCC
GGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTACAGGAGCCC
AGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGAGACATACCC
GGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTGCGCCTACAA
CGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCATCCAAGGGTG
GCTTCTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCA
GCACTTGTCGCTTGCGTATATATTTGCCCATGATGAAACGGGGCGAGAGT
GTCATATGCACGTTTAAATCAAACTGTGAACTCACCAGGATGCTGAAACG
ATACTATCTCATAATCCCTTAAGATAGGCAGGTTCACGTAACGCAAATCT
GCATATTGGTAAACTGCCGAATCGTCTGATTCATCCG
UFO05983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1394-RB | 868 | CG1394-RB | 170..670 | 8..508 | 2505 | 100 | Plus |
| CG1394-RA | 842 | CG1394-RA | 170..670 | 8..508 | 2505 | 100 | Plus |
| CG15200-RA | 546 | CG15200-RA | 378..434 | 410..466 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11170009..11170509 | 508..8 | 2505 | 100 | Minus |
| X | 23542271 | X | 11183308..11183364 | 410..466 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 96..158 | 153 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 93..158 | 150 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 100..156 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 90..158 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 101..158 | 137 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 82..169 | 131 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 68..158 | 129 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 90..158 | 129 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 90..158 | 129 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 82..156 | 129 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 92..158 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 90..156 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 96..158 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 96..158 | 126 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 96..158 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 93..156 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 90..156 | 119 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 96..156 | 116 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 83..158 | 116 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 82..142 | 113 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 100..170 | 109 | 63.4 | Plus |
UFO05983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:20 Download gff for
UFO05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1394-RA | 134..640 | 1..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:21 Download gff for
UFO05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1394-RA | 134..640 | 1..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:29 Download gff for
UFO05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1394-RA | 164..670 | 1..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:29 Download gff for
UFO05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11170009..11170515 | 1..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:21 Download gff for
UFO05983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11064042..11064548 | 1..508 | 99 | | Minus |
