UFO05984.5prime Sequence
1066 bp (976 high quality bases) assembled on 2009-07-25
> UFO05984.5prime
CAGTCGACATGAGCACAAGACCAGACACCAAAGAAACATCCCCACGCGTA
TCCTTGTGTCCCCCAGAACCGGCTCGAACCGAAACGCCAATTCCACCGGC
TGACGACGCCCTATCCATTGATAACTCGTGCCGAGATAGCGAAGTTGGAG
ACGTGCCGGCAGATAACAGCACAGTCACAAAGTCCGATCAGGTGAACGAG
GGCTGTCAAACTCGGCGAGACTCTGGAAATAATCCCGAACAGCCATACTC
GCTGAACAAGATGGCAGGCGTGAGCAATGTAAAGGAGCCCCTTGGGCTCT
GTCCAAACGAGATTAAGGAGGAGCAGCAGGCGTGCTCCAAACTCGATTCA
CGCAATCCGATCACGGGCCTCGGCCTCAACGGAGATGGTGTTGGCGGCCT
CAAGCCCAAGAAGCTAAAGATCCGAGAGGGCAACCCCGTCACAGGCGAGG
GCTACAAGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAAT
GGCGGCACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTC
GTCGGGCCTGTGGGCAAGCTTTCAAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAACGCATGATGAACCTGATCGCAGCGGCA
TCAGCACTTGTCGCTTGCGTATATATTGCCCATGTGAAACGGGGCGAGAG
TTGTCATATGCACGTTTAATCAAACTGTGAACTCCACCAAGGATTGCTGA
AACGAAAAACAATCTCATTACGTTAAGGAATAGCAGGTTTCACGGTACCG
CCAATCTTGCTAAATT
UFO05984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RB | 1583 | CG31363-RB | 244..798 | 9..563 | 2775 | 100 | Plus |
| Jupiter-RC | 1581 | CG31363-RC | 658..796 | 425..563 | 695 | 100 | Plus |
| Jupiter-RE | 1658 | CG31363-RE | 735..873 | 425..563 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11591501..11591911 | 426..16 | 2055 | 100 | Minus |
| 3R | 32079331 | 3R | 11591171..11591309 | 563..425 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:36 has no hits.
UFO05984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:21 Download gff for
UFO05984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RB | 237..801 | 1..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:20 Download gff for
UFO05984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RB | 237..801 | 1..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:55 Download gff for
UFO05984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RB | 237..801 | 1..567 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:55 Download gff for
UFO05984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591168..11591307 | 427..567 | 98 | <- | Minus |
| 3R | 11591501..11591917 | 8..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:20 Download gff for
UFO05984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416890..7417029 | 427..567 | 98 | <- | Minus |
| arm_3R | 7417223..7417639 | 8..426 | 99 | | Minus |
