UFO05985.5prime Sequence
1073 bp (963 high quality bases) assembled on 2009-07-25
> UFO05985.5prime
CAGTCGACATGTTGGCCCTCATCAACAGGATCCTCGAGTGGTTCAAGAGC
ATCTTCTGGAAAGAGGAGATGGAACTCACGCTAGTGGGGCTGCAGTTCTC
CGGGAAGACGACGTTCGTCAATGTTATTGCATCCGGCCAATTCGCTGAGG
ACATGATACCCACAGTTGGATTCAACATGCGCAAGATCACCAGAGGCAAT
GTGACTATCAAGGTGTGGGACATCGGAGGCCAACCTCGATTCCGATCCAT
GTGGGAGCGCTATTGTCGCGGCGTTAATGCGATTGTCTACATGGTGGACG
CAGCCGATCTGGACAAATTAGAGGCCTCGAGGAACGAGCTGCACTCACTG
TTGGACAAACCGCAGCTCGCCGGCATTCCAGTTCTCGTACTGGGCAATAA
ACGAGATCTTCCAGGCGCTCTCGATGAAACCGGACTCATCGAACGAATGA
ATCTATCGAGCATACAGGACCGTGAAATCTGCTGTTATAGTATTTCCTGC
AAGGAGAAGGACAACATTGACATCACGCTGCAGTGGTTAATTCAACATTC
GAAAAGCCAAAGTCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCAG
CGGCATCAGCACTTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGC
GAGAGTTGTCATATGCACGTTTAATCAAACTGTGAACTCACCAGGATGCT
GAAACGAAAACATATTCTCATATCGTTAAGATAGCAGCTTTCCGTAACGG
CAATCTGCAATATTGTCAACTGC
UFO05985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gie-RC | 1901 | CG7891-RC | 116..673 | 9..566 | 2775 | 99.8 | Plus |
| Gie-RB | 1241 | CG7891-RB | 116..673 | 9..566 | 2775 | 99.8 | Plus |
| Gie-RA | 916 | CG7891-RA | 116..673 | 9..566 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8128262..8128424 | 287..449 | 800 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8128041..8128195 | 132..286 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 8126720..8126842 | 9..131 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 8128490..8128607 | 449..566 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:34 has no hits.
UFO05985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:33 Download gff for
UFO05985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7891-RA | 103..664 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:13 Download gff for
UFO05985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gie-RA | 112..673 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:30 Download gff for
UFO05985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gie-RA | 112..673 | 1..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:30 Download gff for
UFO05985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8126716..8126842 | 1..131 | 96 | -> | Plus |
| 3R | 8128041..8128195 | 132..286 | 100 | -> | Plus |
| 3R | 8128262..8128423 | 287..448 | 99 | -> | Plus |
| 3R | 8128490..8128607 | 449..566 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:13 Download gff for
UFO05985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3952438..3952564 | 1..131 | 96 | -> | Plus |
| arm_3R | 3953763..3953917 | 132..286 | 100 | -> | Plus |
| arm_3R | 3953984..3954145 | 287..448 | 99 | -> | Plus |
| arm_3R | 3954212..3954329 | 449..566 | 100 | == | Plus |
