UFO05986.5prime Sequence
801 bp (32 high quality bases) assembled on 2009-07-25
> UFO05986.5prime
CAATCCACATGGGAACTTTGTCACTGAGCGATTTCTGACCTGTGAAGATT
CCCGTACCCTGGGGTCACTTTTCTGGACGTTGGTACGGAAATCGGAACGA
GCGACCCATCTTGGGCATTCTGGGATGGATGGACAACCTGGGAACCTTCT
ATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGACTACTCTGCTTCCAT
CTGCCAGGACCTGGAATATCCTCTCATTTGCCAACGGGAATGTACTACAG
TGTGTACCATTACATGTTCCCTATTCCACTGGTCATGAAGGAATACGGAT
GGTCAAAGGTCTCTCTCATTGGACGCTCAGTGGGCGGAGTCCTGACCTTC
ATTTATGCCTCTCTTGCTCCTCGCACCGTCAATATGATCGTCTCCCTGGA
CATACTGCTCCCCTTGAGAAACTACATATACTACATGGACCTTAGTATAG
AGAAACAACTAGTGAATGTTGAGCGACAAAGCCTGGAAAATTACATTGAG
CCTCCCTCCTACACACACAACCAATTGGGAAAGGTGCTGGCTGCGGGAAG
CTTTAATTCCGTATCCCCCGAACTGGATAAGCACCTCCTCCACCGCCAGT
TGGTCTCCTCCAAACTGTATCCCGAACGGTTCTATTTCACTGTGGATATT
CAAGTAAAGTACTACCACTACATATTTATCGACGATAGACTGGGGGCAGA
TGTGGCGAGGCAGATCATTAAAAAACCATATCAAGTCATCAGGGGCTCCT
TGTCATCATATCTCTCCGTCCGCAATAACGAGGCGATATCGATGTTGGCC
A
UFO05986.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5704-RB | 1289 | CG5704-RB | 126..918 | 9..801 | 3095 | 92.8 | Plus |
| CG5704-RA | 1220 | CG5704-RA | 126..918 | 9..801 | 3095 | 92.8 | Plus |
| CG15879-RA | 1389 | CG15879-RA | 124..538 | 2..416 | 440 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2169924..2170685 | 801..40 | 2985 | 92.8 | Minus |
| 3L | 28110227 | 3L | 2168401..2168761 | 416..56 | 425 | 74.5 | Minus |
| 3L | 28110227 | 3L | 2173778..2173960 | 224..42 | 285 | 77 | Minus |
| 3L | 28110227 | 3L | 2172387..2172680 | 336..43 | 240 | 72.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:00 has no hits.
UFO05986.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:34 Download gff for
UFO05986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 107..900 | 6..800 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:47 Download gff for
UFO05986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 124..917 | 6..800 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:49 Download gff for
UFO05986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5704-RA | 124..917 | 6..800 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:49 Download gff for
UFO05986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2169925..2170692 | 33..800 | 92 | <- | Minus |
| 3L | 2170823..2170848 | 6..32 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:47 Download gff for
UFO05986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2169925..2170692 | 33..800 | 92 | <- | Minus |
| arm_3L | 2170823..2170848 | 6..32 | 96 | | Minus |
