UFO05987.5prime Sequence
1101 bp (976 high quality bases) assembled on 2009-07-25
> UFO05987.5prime
CAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGAAGACCTAC
GTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAGGAGTTGAA
GATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTGGCGCGTCA
AGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGCTGACCCTC
GACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTGCTGCGCCG
TCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCTCGATTACG
TGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGCAGACGCAG
GTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGCGTCCTGAT
CCGTCAGCGTCACATTCGGGCAAGCTTTCAAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTGCTCAAT
AAACCCTTTAGGAAATAGGCCAGGTTTCACCGTACACGCCACATCTGCGA
TATATGTGTAGAACTGCGGAAATCGTCTGTATCACTCAGAGCGATGAAAC
GTTTCAGTTGCTCATGAACGGTGTACAGGTGAACCTATCCATATCCCAGC
TCACGTCTCCATGCATACGAAATTCCGATGACTCATCAGGCGGGCAGAAA
G
UFO05987.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS9-RB | 917 | CG3395-RB | 55..466 | 8..419 | 2060 | 100 | Plus |
| RpS9-RE | 803 | CG3395-RE | 27..437 | 8..418 | 2055 | 100 | Plus |
| RpS9-RD | 706 | CG3395-RD | 27..437 | 8..418 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9511052..9511279 | 235..8 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 9510464..9510652 | 419..231 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:57 has no hits.
UFO05987.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:35 Download gff for
UFO05987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RB | 66..480 | 8..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:56 Download gff for
UFO05987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RB | 55..469 | 8..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:29 Download gff for
UFO05987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS9-RB | 55..469 | 8..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:29 Download gff for
UFO05987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9510464..9510651 | 232..419 | 100 | <- | Minus |
| 3L | 9511056..9511279 | 8..231 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:56 Download gff for
UFO05987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9503564..9503751 | 232..419 | 100 | <- | Minus |
| arm_3L | 9504156..9504379 | 8..231 | 100 | | Minus |
