UFO05988.5prime Sequence
1108 bp (986 high quality bases) assembled on 2009-07-25
> UFO05988.5prime
CAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGGTGCTTTAT
CCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAATGTGGTGAC
CGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATCACCCCTTA
TTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGAACACGGCG
CGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGAAAGGTTGG
CCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCGCGTGGACA
TCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATGTAAGCATG
GCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGGAAGCCGTG
GCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCGTTCGCCCA
TGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTACGACCCAT
TTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACCTCCACGCT
GAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAATGTGGACA
TACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCGAACGGAAT
TGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTCCCCGCCAA
TATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGATGCCAACCT
TTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGGTGCTGACA
GTGGCTGCAGTGAAACATCTGGAGCAGCGCCTGCTCTACCAACTTAATCG
AAACGACGCCGCCAGCAAGGGCGGCAAGTTTAAGCTGGATCAAGTCGCAT
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCA
TATCATATCATATCATATCACACTAGCCTAGAGATCTGTCATGACTAGTG
CTGATCTCACCAATAAAAAACGCCCGGCGCACGAGCGTTCTGACCATCAG
ATGGAGTTCTGAGGTCATTATCGATCTATCAAGGAATTCAGCGAGCTCGA
TCATTAGC
UFO05988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-RA | 1012 | CG5818-RA | 51..938 | 9..896 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16328412..16329082 | 679..9 | 3355 | 100 | Minus |
| 2L | 23513712 | 2L | 16328133..16328349 | 896..680 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:03 has no hits.
UFO05988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:36 Download gff for
UFO05988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 40..934 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:28 Download gff for
UFO05988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 44..938 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:38 Download gff for
UFO05988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 44..938 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:38 Download gff for
UFO05988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16328133..16328349 | 680..896 | 100 | <- | Minus |
| 2L | 16328412..16329088 | 1..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:28 Download gff for
UFO05988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16328133..16328349 | 680..896 | 100 | <- | Minus |
| arm_2L | 16328412..16329088 | 1..679 | 99 | | Minus |
