UFO05990.5prime Sequence
1130 bp (1004 high quality bases) assembled on 2009-07-25
> UFO05990.5prime
CAGTCGACATGGAGATGCTACCCAACCAAACGATTTACATCAACAATCTG
AACGAGAAGATCAAGAAGGAGGAGCTAAAGAAGTCGCTCTATGCGATTTT
CTCGCAATTCGGCCAAATTCTGGACATTGTGGCCCTAAAAACGCTCAAAA
TGCGCGGCCAGGCATTTGTGATCTTCAAGGAGATCGGCAGCGCTTCGAAT
GCCCTGCGCACCATGCAGGGCTTCCCGTTCTACGACAAGCCCATGCAGAT
CGCCTACTCCAAATCCGATTCGGATATTGTGGCCAAGATAAAGGGTACCT
TCAAGGAGCGCCCCAAGAAGGTCAAGCCACCAAAACCAGCGCCGGGTACC
GATGAGAAGAAGGACAAGAAGAAGAAGCCGAGCAGCGCCGAGAACTCGAA
CCCGAACGCACAGACCGAGCAGCCGCCGAACCAGATCCTCTTCCTCACCA
ATCTGCCCGAGGAGACCAACGAGATGATGCTGTCCATGCTGTTCAATCAG
TTCCCCGGCTTCAAGGAGGTGCGTCTTGTGCCGAATCGTCACGACATCGC
CTTTGTGGAGTTCACCACCGAGTTGCAGAGCAATGCCGCCAAGGAGGCGC
TGCAGGGCTTCAAGATTACGCCGACGCACGCCATGAAGATAACGTTTGCC
AAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCG
CCCTCCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGTAGCCATCACAAACGGCATGATGACCTGATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGGTGAAACGGGGGCGAA
AAAGTTGTCCTAACTGGCCACGTTAATCAACCTGTGACTCACCAGATGGC
TGAAACGAAAACATTCCATACGTAAGGGAA
UFO05990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..760 | 9..656 | 3225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 9..362 | 1770 | 100 | Plus |
| X | 23542271 | X | 5310132..5310426 | 362..656 | 1460 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:40 has no hits.
UFO05990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:38 Download gff for
UFO05990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 104..759 | 1..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:51 Download gff for
UFO05990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 1..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:02 Download gff for
UFO05990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..764 | 1..660 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:02 Download gff for
UFO05990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5309350..5309706 | 1..361 | 98 | -> | Plus |
| X | 5310132..5310430 | 362..660 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:51 Download gff for
UFO05990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203383..5203739 | 1..361 | 98 | -> | Plus |
| arm_X | 5204165..5204463 | 362..660 | 99 | == | Plus |
