UFO05991.5prime Sequence
1080 bp (983 high quality bases) assembled on 2009-07-25
> UFO05991.5prime
CAGTCGACATGATGAGTGGTCAGCCACTTGGCTCGAGGGTTTGGCTGTTG
TCCGGAGTGCTATTAGTGACATTTGCTGGGACAGATGCCTACGGATTTGG
ACGTTGCCCGAATTATCCATCGATGCCAAAGTTTAACATGAGTCGGGTCC
TTGGACACTGGTACGAGGTAGAGCGCTCTTTTTACCTTCCGGAAATCGCC
TCCGGATGCACCACCTTTCAGTTTGAGCCGTACAACAAGGGCGAACAATC
GAAGTTTTCCAATTTCAAGCTGGCTGTGGCCATTAAAAACATTAATCGCA
TAACTGGTAATCCGAATGTGAACATTGGCTATGCAACACCAGAAAACAGC
CGATCCTCCATCATGGATTTTAAGTTTACCACCCGATTTCCGGACGTGAT
TGCCCGACTACTGCCAGGTTCCGGAAAGTACCAGGTGCTATACACAGACT
ACGAGAACTTCGCCATCTTGTGGTCCTGCGGCAGCATTGGCTCACTGGGT
CACTCCGATCAGATCTGGATTCTTGGACGTGATCGGGACTTCGAGGTGGA
TATCCGATCCAAAGTGTACGACGTGTTGAAGCGGCTCTCTCTGGATCCGG
AAAGGCTCATCATCAGCAAAAACAAACAATGCCCCGAGGCGCTGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCATC
GCAGTACTGTGTAATTCATTAAGCATTCTGCGACATGCAGCATCACAAAC
GCATGATGACTGAATCGCAGCCGCATCAGCACTGTCGCTGCGTATATATT
GCATGTGAACGGGGGCAAAAGTTGTCATATGCCACGTTAAATCAACTGGG
GAACTCCCAGAATGCCTGAAACGAAACATT
UFO05991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GLaz-RF | 1101 | CG4604-RF | 204..840 | 8..644 | 3170 | 99.8 | Plus |
| GLaz-RE | 1084 | CG4604-RE | 282..918 | 8..644 | 3170 | 99.8 | Plus |
| GLaz-RD | 1023 | CG4604-RD | 221..857 | 8..644 | 3170 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13164220..13164491 | 644..373 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 13164677..13164832 | 301..146 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 13166422..13166562 | 148..8 | 690 | 99.3 | Minus |
| 2R | 25286936 | 2R | 13164546..13164618 | 374..302 | 365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1712..1748 | 1021..1057 | 113 | 78.4 | Plus |
UFO05991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:39 Download gff for
UFO05991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GLaz-RA | 38..693 | 1..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:33 Download gff for
UFO05991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GLaz-RD | 214..869 | 1..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:42 Download gff for
UFO05991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GLaz-RD | 214..869 | 1..655 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:42 Download gff for
UFO05991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13164208..13164489 | 375..655 | 98 | <- | Minus |
| 2R | 13164546..13164618 | 302..374 | 100 | <- | Minus |
| 2R | 13164677..13164831 | 147..301 | 100 | <- | Minus |
| 2R | 13166424..13166566 | 1..146 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:33 Download gff for
UFO05991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9051713..9051994 | 375..655 | 98 | <- | Minus |
| arm_2R | 9052051..9052123 | 302..374 | 100 | <- | Minus |
| arm_2R | 9052182..9052336 | 147..301 | 100 | <- | Minus |
| arm_2R | 9053929..9054071 | 1..146 | 96 | | Minus |
