UFO05992.5prime Sequence
1098 bp (1000 high quality bases) assembled on 2009-07-25
> UFO05992.5prime
CAGTCGACATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAACCGCACCTG
CTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGAGAAGGAGGC
GGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGATCATCGATA
GCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATAAAGGAGGTT
CCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAACTTTGTCTG
CTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGATCACATCCC
TGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCCGTCCTGGGA
CTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCAGATCAGCAA
GGCATCTAATTATGGATCCTCCAAGTCGGTCGCCAAAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAAGGGAAATAGGCCAGGTTTCAC
CGTAACACGCCACATCTTGCGGAATATAATGTTGTAGAACTGCCGGAAAT
CGTTCTTGGTTATTCACTCCGAGCGATGAAAAACGGTTCAGTTTGCTTCA
TTGGAACCGGGTGTAACAAGGGTGAAACACTATCCCTATCACAGCTCA
UFO05992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 1118..1542 | 9..433 | 2125 | 100 | Plus |
| CG4729-RD | 845 | CG4729-RD | 114..538 | 9..433 | 2125 | 100 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 941..1365 | 9..433 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16382382..16382727 | 354..9 | 1730 | 100 | Minus |
| 3L | 28110227 | 3L | 16382079..16382157 | 433..355 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 16379425..16379558 | 199..66 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:15 has no hits.
UFO05992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:40 Download gff for
UFO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:31 Download gff for
UFO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:03 Download gff for
UFO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 933..1377 | 1..448 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:03 Download gff for
UFO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382079..16382157 | 355..433 | 100 | <- | Minus |
| 3L | 16382382..16382731 | 1..354 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:31 Download gff for
UFO05992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375179..16375257 | 355..433 | 100 | <- | Minus |
| arm_3L | 16375482..16375831 | 1..354 | 98 | | Minus |
