Clone UFO05996 Report

Search the DGRC for UFO05996

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:59
Well:96
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9114-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05996.5prime Sequence

414 bp (245 high quality bases) assembled on 2009-07-25

> UFO05996.5prime
CAGTCGACATGCTGCCGTTTGTCCAGGAGAATGTGCCGGAGATGCTGCTC
CAGCCGGCCCGGTTGGCCTTCTGCGCCAATCTTCACGTGGGCCGACCGCG
GGATGACCCCACTACATTGGTTTTAGCGAGAAACCTAAAGTTCTACGAAT
TCCGGCGCAAGGATCTGGTGCACTACATCGATTTGAAGGTCACGAAACTA
AAAGCAAAATAGCCACCCAACTGGGAGGCCTACGACGGACCGGTTTTGTT
CCTTTTCTGTCCCAGCAGGGACCCCCACTGGACGAAAAAGGTTGGACTGG
AAGCATGCTCTGGATCCCGCCGGAGAGGATTTTGCCCCCTTCAATTTTGG
GAAAAGTTTGGTGGGGGCCACGGGAAGGGCATCCTAACTGTTTAATTTCA
TGGCGGGAAGCATC

UFO05996.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9114-RA 2315 CG9114-RA 212..591 8..414 1260 90.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15332682..15332943 274..8 1065 95.9 Minus
Blast to na_te.dros performed on 2014-11-28 21:53:04 has no hits.

UFO05996.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:31 Download gff for UFO05996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 494..763 1..280 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:25 Download gff for UFO05996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 55..324 1..280 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:57 Download gff for UFO05996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9114-RA 208..477 1..280 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:57 Download gff for UFO05996.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15332617..15332947 1..349 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:25 Download gff for UFO05996.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15226650..15226980 1..349 91   Minus