UFO06001.5prime Sequence
1076 bp (974 high quality bases) assembled on 2009-07-27
> UFO06001.5prime
CAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGCTGCAAAAG
GCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCGACGGATGA
GGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCACGCCAACC
GCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGCACCTGGAA
AAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTTCTGTACGA
AGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTTCAAGAGCA
GGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCAGCGAGCTG
CCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAGCAGCACCT
TCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGACAAGCAGT
ACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACAATCTTAGC
CACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACTCTGCAGAG
CGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGACGTGGAAT
GGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCTACGTTTTG
TTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAGTCCTTCAC
CGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGAGTTGCTTA
AGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAAAGGAAAGT
GGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGACTCACTCGC
TCCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGGATCGAATC
AGCTCGTTTTGCAGATTCGCTACTTTGATTTATCAAGTGTGCCACTGTCT
GGGCCAACTTAACTGCTCAGGATGCACGCAGGGTGACACAAACTTGGTCA
CACTATGCGCATTGTACCCATGACTGGGCATGGATAACCATCGGGATTCA
TCGAGCTACGAGCTCGATTTAACGCG
UFO06001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| thoc5-RA | 2035 | CG2980-RA | 74..1068 | 9..995 | 4795 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23954297..23955093 | 82..878 | 3985 | 100 | Plus |
| 2R | 25286936 | 2R | 23954164..23954239 | 9..84 | 380 | 100 | Plus |
| 2R | 25286936 | 2R | 23955147..23955239 | 878..968 | 365 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:45 has no hits.
UFO06001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:50 Download gff for
UFO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 72..1084 | 9..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:27 Download gff for
UFO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 74..1086 | 9..1009 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:00 Download gff for
UFO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| thoc5-RA | 74..1086 | 9..1009 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:00 Download gff for
UFO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23954164..23954238 | 9..83 | 100 | -> | Plus |
| 2R | 23954299..23955093 | 84..878 | 100 | -> | Plus |
| 2R | 23955148..23955253 | 879..979 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:27 Download gff for
UFO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19841687..19841761 | 9..83 | 100 | -> | Plus |
| arm_2R | 19841822..19842616 | 84..878 | 100 | -> | Plus |
| arm_2R | 19842671..19842776 | 879..979 | 93 | -> | Plus |
