UFO06003.5prime Sequence
1133 bp (1022 high quality bases) assembled on 2009-07-27
> UFO06003.5prime
CAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCACCAAGCGG
CCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGGGGCGAGGA
TCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCTGCTGCAGC
CGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACAACGAGCAG
CTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGGTGCATCGA
AATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCTACACACGC
TGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAGAACCAACA
TTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGACGAATGGCT
GAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGATGTGCCCG
AAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGGTTACGGGC
ACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATGATGCACAG
CATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTTCCGTAGCC
AGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCAACTATCGC
AAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATACTCGCTGA
TGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATCGCTAATTG
ATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAATCCTCTTCC
TGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTGTCGGATGA
AGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCTTCTACTTG
CCCTCTACGAGGCAGTGCACCTGATCGGACTTCATCACAACTCTGGCTCA
CACGCAGCAGAGTCCAGTGCCCGCCCCTCGCCCAGTAACACATTGAGTCT
GGCCCACCTGTGCCGGATCTATCTATGCACCCATCATGACATTACGCAGT
ATCCCACCAATCTGGCTGGTGGCGTATTTCAGTACTGTCCATCGTGATGC
AGAAATAGACCGATCGAGCATGCTAATCTGGAA
UFO06003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8379-RA | 2447 | CG8379-RA | 144..1278 | 8..1130 | 5285 | 98.5 | Plus |
| CG8379-RB | 2450 | CG8379-RB | 144..1281 | 8..1130 | 5245 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8824954..8825408 | 264..718 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 8825632..8826023 | 718..1102 | 1490 | 96.2 | Plus |
| 3R | 32079331 | 3R | 8824686..8824889 | 61..264 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 8824554..8824610 | 8..64 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:20 has no hits.
UFO06003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:57 Download gff for
UFO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 141..1269 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:16 Download gff for
UFO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 140..1268 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:51 Download gff for
UFO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8379-RA | 140..1268 | 1..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:51 Download gff for
UFO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8824550..8824608 | 1..62 | 95 | -> | Plus |
| 3R | 8824688..8824889 | 63..264 | 100 | -> | Plus |
| 3R | 8824955..8825408 | 265..718 | 100 | -> | Plus |
| 3R | 8825633..8826046 | 719..1121 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:16 Download gff for
UFO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4650272..4650330 | 1..62 | 95 | -> | Plus |
| arm_3R | 4650410..4650611 | 63..264 | 100 | -> | Plus |
| arm_3R | 4650677..4651130 | 265..718 | 100 | -> | Plus |
| arm_3R | 4651355..4651768 | 719..1121 | 96 | | Plus |
