UFO06004.5prime Sequence
1116 bp (979 high quality bases) assembled on 2009-07-27
> UFO06004.5prime
CAGTCGACATGGCCACGACAAGATCCGCCGGAGGTGCCGCCACGTCCGTT
GATACTGGACCGGCAGCAGGGAACTCGGGTATCAGAAAGCTATCGACGGC
TAGCGTCGGTGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCAGAGCTGCT
ACTACTGCACCCGGGAGCACTTTAAAAGCATCAGCGACTTCGTCAATCAC
CTGCGAAATCGTCACTGTACCCGGGAGGGTGGCTCATTTGTGTGCCGCTA
TGGCTTCAATGGAGTATGTGCCTCGCTTCCACTGGACGGAGTCTCAGATC
GCGATTACGACGCCCATGTCGCCAAGTACCATGTCAATCAGCACACGCGC
GAAATGCCTCCCGAATGGGGAGTCTACTCGGCGGCCCAAAACCTGCCAGC
GGTGCTCAACGATCCCTCGCGAGGAAAGCAGAGTAATCTGTTTACCAAAA
AGTGGGGCGAGCATTTTGTGGAACGAAGTCATGTGCCCCCATCACCCCGA
TTGCCCGATATAACCCATGCGGATTTTACCGTGTATCTGGGCAGCATAGG
GAAGCGATATCGTTGGCATGAGCGGCGGCAGCAACAACTGGAGCGTGATA
AACCGCTGGAGAATGGAGCACAAGGAGCACCTGGACCGGGAACTGGTGGT
CAGACACCAACACACTTGAGTTCTGTGCCCGAGATCTTTCTGAAATCACA
ACTGCAGCTTCATCATCCGGCAACCTTTAAGCAGGTATTTCCTAATTACA
TGCAAACATCGGCTTCCAGTCCGGAAAGTCATCAGCAAACTGGTCGTCAG
CTGCAGGAACAGCTGAGTCACTACCTGGACATGGTGGAAGTTAAAATAGC
GCAACAGGTATCGCAGAATCGGCTGCGTTCTTTCACGCCATGACCACGCA
GCACGCTATTCTGGCTGAGATGGAGCAGCGCCGACCAAGTACGTCAGTTG
CGGGCAGCACTGGCCGACTCACAGCCACCTCGGTTGTAGACAGCTTCAAG
TGCTGCGGTTCCGCCAAGAAGACGCACTATACCTCCACACTAGAACAAAC
TCCGACTGATGCACGTACCAAGAACGCACCGATGGCTGCAGCTCCTACTG
GACCAGGACTATGTGG
UFO06004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 3558 | CG3766-RA | 310..1429 | 9..1116 | 5050 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9432281..9433151 | 197..1061 | 3800 | 97.8 | Plus |
| 2L | 23513712 | 2L | 9431714..9431901 | 9..196 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:05 has no hits.
UFO06004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:56 Download gff for
UFO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 300..1427 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:05 Download gff for
UFO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 302..1429 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:06 Download gff for
UFO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 302..1429 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:06 Download gff for
UFO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9431706..9431901 | 1..196 | 97 | -> | Plus |
| 2L | 9432281..9433212 | 197..1116 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:05 Download gff for
UFO06004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9431706..9431901 | 1..196 | 97 | -> | Plus |
| arm_2L | 9432281..9433212 | 197..1116 | 97 | | Plus |
