UFO06005.5prime Sequence
1120 bp (1006 high quality bases) assembled on 2009-07-27
> UFO06005.5prime
CAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACAATGCCGGC
GAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATCGCTTTTCA
TCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCTAGTCTGCG
GCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATACTGGAGCGC
AAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGACATATCCGC
CGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACATTTACTCAT
TCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCGAGGATGGC
AGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCTCTGTGCAT
TTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGGCCGTGTCT
TCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCCTCACCATC
GATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACTGTCTGTTG
TAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCACTGCCGGAA
AGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCCGGCTGTCG
GAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGACTTGCTGCG
GCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGCCATCTGGG
CCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGGTCATCTGG
GCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGACAAAGGGCAA
GGAGTTCGCACTGACGCCCATCAAGACGGAACTCAAAGATATCCGACATA
TTGCCGGCGGTCAGCACCATACTGTCATCCTGACACGGACCTTAAGTGTT
CCGTATGGTCGTCCGGAGTACGTCGCTTGTCTGGGCGATGTCAAGGATGT
TGTGAGAACCACGATTGTAAAAGCTGACGAAAAGATTGTGTCGTTGGATG
TGGCGAATCTGTTCTCATGCCCGTTACAATGGATGCCAACTGATTCCTGG
GCTCCGGTTTACAAATAACT
UFO06005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..1240 | 9..1108 | 5085 | 98 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1299 | 9..1108 | 5085 | 98 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..1520 | 9..1108 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5931616..5932281 | 674..9 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5931129..5931559 | 1089..672 | 1430 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:53 has no hits.
UFO06005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:55 Download gff for
UFO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1277 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:17 Download gff for
UFO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1502 | 9..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:25 Download gff for
UFO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1502 | 9..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:25 Download gff for
UFO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5931125..5931558 | 673..1092 | 95 | <- | Minus |
| 3L | 5931618..5932281 | 9..672 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:17 Download gff for
UFO06005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5924225..5924658 | 673..1092 | 95 | <- | Minus |
| arm_3L | 5924718..5925381 | 9..672 | 100 | | Minus |
