UFO06006.5prime Sequence
1102 bp (997 high quality bases) assembled on 2009-07-27
> UFO06006.5prime
CAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCAAGGAGGCG
GACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAATGCGGATCT
GCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGAACTGTGGC
TGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATCTGCATACG
CAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTCAGCCTGCA
GACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCTGGCTAGGA
TTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGCTTAAACAG
GAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAATCGGAGGT
GATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCAGAGCTCCG
ACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAATCCTGAAG
AGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTACTACGACAT
GAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCGCTCTCGCC
TCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGCTGGACGAC
AAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATCATCTGCGA
ACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAAGAGCCCCA
ACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGAGGGAGCTA
CTCCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCCGTCGTCAC
ACACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCTGACAGACT
CACCCTGCGTTGCTCAATGCCGAGTTGGAGTCGCACAAGGAAAGAGAGCA
GACACGAGAGGAAAAAGAATACAGAAGCTGGAGCGGGGAGCAAACCCGTG
AGTGCTGCTCGCATGCTCGAAAGCGCATGTCGAGTCTGGACGTGCTACTC
CGCTACTAGCATCTCTGACCAACGGAGCAGGCTAGCTCGCATGATGCTTT
CC
UFO06006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 2970 | CG15797-RB | 126..1245 | 5..1102 | 4975 | 97.6 | Plus |
| ric8a-RA | 2438 | CG15797-RA | 126..1245 | 5..1102 | 4975 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9256441..9257371 | 88..1013 | 4305 | 98.5 | Plus |
| X | 23542271 | X | 9260754..9260977 | 795..1013 | 740 | 92.9 | Plus |
| X | 23542271 | X | 9260652..9260762 | 597..707 | 465 | 94.6 | Plus |
| X | 23542271 | X | 9256293..9256377 | 5..89 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:22:47 has no hits.
UFO06006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:54 Download gff for
UFO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 99..1222 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:51 Download gff for
UFO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 122..1245 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:30 Download gff for
UFO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 122..1245 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:30 Download gff for
UFO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9256289..9256377 | 1..89 | 96 | -> | Plus |
| X | 9256443..9257477 | 90..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:51 Download gff for
UFO06006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9150322..9150410 | 1..89 | 96 | -> | Plus |
| arm_X | 9150476..9151510 | 90..1102 | 97 | | Plus |
