UFO06007.5prime Sequence
1095 bp (995 high quality bases) assembled on 2009-07-27
> UFO06007.5prime
CAGTCGACATGCTGCGCGTACCCAAGTTTCTGCCCCGTCTCGCCCGCCAG
GCCGGCGTGGTACCCTCCCATATGTCCGGAGCTTCTAGCATGTTCCGCAA
TCTGCCAGGTGCTAGCAATGGAATATCGTCCCAGCTGCGTTACAAGTCCG
GTGAGGTCAAAGGTGCTGTTATTGGAATCGATCTGGGAACAACCAACTCC
TGCCTGGCCGTCATGGAGGGCAAGCAGGCCAAGGTGATTGAAAACGCCGA
GGGAGCCCGGACCACACCCTCCCACGTCGCCTTTACCAAGGACGGTGAGC
GGCTGGTCGGCATGCCCGCCAAGCGCCAGGCAGTGACAAACTCGGCCAAC
ACCTTCTATGCCACCAAGCGACTGATTGGCAGACGTTTTGATGATCCCGA
GGTTAAGAAAGACATCACTAACCTGTCCTACAAGGTGGTCAAGGCTTCAA
ATGGCGATGCCTGGGTCTCTTCCACCGACGGCAAGGTGTACTCTCCATCC
CAAATCGGTGCTTTCATCCTGATGAAGATGAAGGAAACCGCTGAGGCATA
CCTGAACACTCCCGTGAAGAACGCCGTGGTCACCGTGCCCGCCTACTTCA
ACGACTCCCAACGCCAGGCCACCAAGGATGCTGGTCAAATCGCTGGTCTT
AATGTGCTGCGCGTGATCAACGAGCCCACTGCTGCCGCGTTGGCCTATGG
AATGGACAAAACGGAGGACAAAATCATTGCCGTTTACGATTTGGGTGGCG
GCACCTTCGATATTTCGATTTTGGAGATCCAGAAGGGAGTGTTCGAAGTC
AAGTCCACCAATGGTGATACCCTCCTCGGTGGTGAGGACTTTGACAACCA
TATCGTCAACTTCCTGGTGGCCGAATTCAAGAATGATAGTGGAATTGATA
TCCGCAAGGACACATTGCCATGCAGCGACTGAAGGAGCGGCCGAGACGCC
AAGTGCGAGCTGTCCTCCTCCCACAGACTGACATCATTCTGCCTTATCTT
GACCATGGGATGCCGCCGGTTCCCAGCCCATGAAACTGAAGCCTGAAACC
GCTCAGCTGAAAGCTATTTGGGGATCTTGATTCAGCGTACATTCA
UFO06007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-5-RB | 2791 | CG8542-RB | 139..1223 | 9..1090 | 4955 | 97.7 | Plus |
| Hsc70-5-RA | 2922 | CG8542-RA | 270..1354 | 9..1090 | 4955 | 97.7 | Plus |
| Hsp68-RA | 2231 | CG5436-RA | 576..757 | 528..709 | 370 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14254829..14255407 | 724..146 | 2895 | 100 | Minus |
| 2R | 25286936 | 2R | 14254338..14254657 | 1042..725 | 1220 | 96.3 | Minus |
| 2R | 25286936 | 2R | 14255834..14255923 | 98..9 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 24056554..24056735 | 709..528 | 370 | 80.2 | Minus |
| X | 23542271 | X | 11803811..11804130 | 841..525 | 350 | 74.7 | Minus |
| 3R | 32079331 | 3R | 15244735..15244892 | 525..682 | 310 | 79.7 | Plus |
| 3R | 32079331 | 3R | 11955739..11955868 | 709..580 | 305 | 82.3 | Minus |
| 3R | 32079331 | 3R | 11959210..11959339 | 580..709 | 305 | 82.3 | Plus |
| 3R | 32079331 | 3R | 12467007..12467136 | 709..580 | 290 | 81.5 | Minus |
| 3R | 32079331 | 3R | 12503173..12503302 | 580..709 | 290 | 81.5 | Plus |
| 3R | 32079331 | 3R | 12506456..12506585 | 580..709 | 290 | 81.5 | Plus |
| 3R | 32079331 | 3R | 12509739..12509868 | 580..709 | 290 | 81.5 | Plus |
| 3R | 32079331 | 3R | 13045825..13045961 | 564..700 | 265 | 79.6 | Plus |
| 2R | 25286936 | 2R | 14255667..14255715 | 147..99 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:26 has no hits.
UFO06007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:53 Download gff for
UFO06007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-5-RA | 262..1322 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:56 Download gff for
UFO06007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-5-RA | 262..1322 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:00 Download gff for
UFO06007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-5-RA | 262..1322 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:00 Download gff for
UFO06007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14255834..14255930 | 1..98 | 95 | | Minus |
| 2R | 14254321..14254657 | 725..1059 | 95 | <- | Minus |
| 2R | 14254829..14255407 | 146..724 | 100 | <- | Minus |
| 2R | 14255669..14255715 | 99..145 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:56 Download gff for
UFO06007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10141826..10142162 | 725..1059 | 95 | <- | Minus |
| arm_2R | 10142334..10142912 | 146..724 | 100 | <- | Minus |
| arm_2R | 10143174..10143220 | 99..145 | 100 | <- | Minus |
| arm_2R | 10143339..10143435 | 1..98 | 95 | | Minus |
