UFO06011.5prime Sequence
1077 bp (988 high quality bases) assembled on 2009-07-27
> UFO06011.5prime
CAGTCGACATGAGATTTATAAATTGGGTACTTCCCCTGCTTCTGGCCACG
TTGGTCGCCCTGCAACAGCCCACACTAACGGACGCTCTGATCGAGGATGT
CCTGGACATCATACATGTGGTCAAAGAGGTCACCTCCGGCGTCCTCAAGG
CCTGGGACATTGTACAATCCTCCCCGTTGGCGGCCAACATTGATTTCCCA
CTGATGCGCGAGAAACAGAAGAAGGTGTTGCAGCGCCTCAAAGAAGTCAG
CAAGCAAATAGACAATACCGAAGATCAGCACGCTCAATATGTTGCCTTGG
CCATCGAATCGGTGACTAGCTTCATGCACAACAACGCTCCAATTATGGCT
AAGATGAATGATATCTCGGACACGATCAATAGGATCTCATCGCGCTATCA
GCAGATGCAGAAGTACGAGGCTTACAAGGACAAGTTGGAGATGTCCACGC
TGATAACGTTTGCGGAGTGGACAGTGTCGCCGAATGCACATTCGGTGCAC
CATCTGATGGATCGTCTGCATATCACTCTACTTGGCAACGAGGATCGATC
TTCCAACACAACGTCCACCAATCTACTCCAACAGCTGGCCACTGCCTATG
AGGTGTCTACCGATCAAATTTGCAATACCATGCAATCGGCCCAGCAGTTT
ATATACTCACTATATGCGGATATAGCCCTGACCGAACTGAAAGCCTACAC
CATGATGGAATTCTCGTGGATGATGTTGCGGGTCTACGGGAAGGGCAACT
ACACCCAGGAGGCGGAAATCATGCGTTCCGAATATGAGAAGAGGACGGAA
CGCACACTAAAAATACTCAAGGATGTGATGCTACGAGCTGATCGTATCGT
TTACCGCTGTGATCCGACGAACATGTACGGGGAGTCACTATGACGAGGTC
ACGCGCCTCCTTCAAGGCTACATTGAAACGAGGTGGATTTGATAAAGAGG
AAACTTGCGAGAGACGTGTGACTTTATCAGTCCACCCGCAGTGAGCTGCT
TTAGATCTCTACTGTCCGGTCAGTCGAATGTATGGTCGTCTGTACACTGG
CAGGTCGTAGACTCCGACTTGGGGGTG
UFO06011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0193-RA | 2453 | CG2206-RA | 233..1315 | 9..1077 | 4980 | 98.2 | Plus |
| l(1)G0193-RB | 2559 | CG2206-RB | 933..1421 | 603..1077 | 2010 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7942739..7943229 | 1077..601 | 1720 | 95.7 | Minus |
| X | 23542271 | X | 7945894..7946223 | 604..275 | 1650 | 100 | Minus |
| X | 23542271 | X | 7946407..7946676 | 278..9 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:19 has no hits.
UFO06011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:48 Download gff for
UFO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 327..1413 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:37 Download gff for
UFO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1315 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:55 Download gff for
UFO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0193-RA | 229..1315 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:55 Download gff for
UFO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7942739..7943227 | 603..1077 | 95 | <- | Minus |
| X | 7945896..7946219 | 279..602 | 100 | <- | Minus |
| X | 7946407..7946680 | 1..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:37 Download gff for
UFO06011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7836772..7837260 | 603..1077 | 95 | <- | Minus |
| arm_X | 7839929..7840252 | 279..602 | 100 | <- | Minus |
| arm_X | 7840440..7840713 | 1..278 | 98 | | Minus |
