UFO06012.5prime Sequence
1086 bp (980 high quality bases) assembled on 2009-07-27
> UFO06012.5prime
CAGTCGACATGCCCAAAATGGACAACGAGCAGCCGCATCAAGAGCTAGTG
AAGTGCGTCCTGGTGGGGGACACGGCCGTGGGCAAGACGCGACTGATCTG
CGCGAGGGCCTGCAACAAACACGTCTCGCTATCTCAGCTCCTCTCTACGC
ACGTGCCGACCGTGTGGGCCATTGACCAGTATCGCATATATAAGGATGTA
CTCGAGCGATCATGGGAGGTGGTCGATGGAGTGAATGTCTCACTTCGCCT
ATGGGACACATTTGGTGACCACGACAAGGATCGGCGCTTCGCATACGGCA
GATCCGATGTGGTGCTGCTGTGCTTTTCCATTGCCAGTCCGATTTCCCTG
CGCAACTGCAAGATGATGTGGTATCCGGAAATTCGCCGCTTTTGTCCGGA
TGTTCCCGTCATTCTAGTTGGCTGCAAGAACGACCTGCGCTACATGTATC
GCGACGAGAACTATCTCTCGTATTTCGGCGAGAAGGGAACCTTTGTTCGA
GCCGCGTTGAAGAGTGACCTGGTTATGCCGGATGAGGCGCGTGCCGTCGC
CAAAGAGCTAGGAGTGGCGTACTACGAGACCAGTGTTTTCACATACTTTG
GGGTGAACGAGGTGTTTGAAAACGCCATCCGATCCGCGTTGATTGCACGC
CGACAGCAGCGCTTCTGGATGACAAACCTGAAGAAGGTGCAGAAGCCCCT
GCTGCAGGCGCCGTTCCGGCCACCGAAGCCACCACCACCGGAGGTCACCG
TCATGGTCGGCAACTATCGGCAGGACATCTACAACATGTTCCTGTCGCAG
GCCTACACCGACCTCGTCCTGGTCGGGGCGGGTGGCACCAAGTTCGCCGT
GCACAGGTTCATGCTAGCCGCCGCGTCCAGCATCTTCCAGCGCTGCTTAG
CACTGAGCTGACTGATATGGGCGGGCGGAGCAGCAGCGAATCTAGCATGG
TCAGCCTCAACATTCGGGAGGCCACCATTGCGAACTTACGAATGAACACG
GAGGCCCTGATCCGCCTACGATCACGCCACACACCGATGTGGAACCTTGA
AGGGCGATTCAGCTACAGCGTTTGCCTCTCCATGGG
UFO06012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoBTB-RC | 2974 | CG5701-RC | 127..1204 | 8..1080 | 4930 | 98 | Plus |
| RhoBTB-RB | 3257 | CG5701-RB | 389..1466 | 8..1080 | 4930 | 98 | Plus |
| RhoBTB-RA | 3257 | CG5701-RA | 389..1466 | 8..1080 | 4930 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20379311..20379828 | 499..1015 | 2310 | 97.7 | Plus |
| 3L | 28110227 | 3L | 20378879..20379079 | 299..499 | 1005 | 100 | Plus |
| 3L | 28110227 | 3L | 20378459..20378650 | 8..199 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 20378712..20378815 | 198..301 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:36 has no hits.
UFO06012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:49 Download gff for
UFO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 414..1466 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:06 Download gff for
UFO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 384..1436 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:39 Download gff for
UFO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoBTB-RA | 384..1436 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:39 Download gff for
UFO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20378454..20378648 | 1..197 | 97 | -> | Plus |
| 3L | 20378712..20378815 | 198..301 | 100 | -> | Plus |
| 3L | 20378882..20379079 | 302..499 | 100 | -> | Plus |
| 3L | 20379312..20379851 | 500..1039 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:06 Download gff for
UFO06012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20371812..20371915 | 198..301 | 100 | -> | Plus |
| arm_3L | 20371554..20371748 | 1..197 | 97 | -> | Plus |
| arm_3L | 20371982..20372179 | 302..499 | 100 | -> | Plus |
| arm_3L | 20372412..20372951 | 500..1039 | 97 | | Plus |
