UFO06013.5prime Sequence
1051 bp (793 high quality bases) assembled on 2009-07-27
> UFO06013.5prime
CAATCCACATGGCTGCAGCTGCGGATCTGGTTGTTCCTACCCTTGCCATT
CGCTCTAGCGTGGCCGTGGAATTGTGGTCCTCGGCGGGCTCCAAGCAGCC
CTTCCAGCACAAGCCCCACCTGCCGCGCGAGGAGACGAAAAGCTCGCGCT
CGATCTGCTTCAGCTCCAACGGCCGGTACTTCGCCTACTCCAACGGGCAG
GAAGTCAAGGTGCTCCAGGCCAGCCGGGACAGCGCAGCCAGCTGGCCAGT
GATATGCGTGCTGCCCAGGCCGAAAGCCTTCTACCTCCAATTCTCGCCAC
GTGGCAGCTACCTGTGCACCTGGGAGCACTATGCCATCACTAAGGACCGG
CCGGAGGGGTCACCCAATCTGCTCGTCTACGAAGTGGCCACCGGTGTCGA
AGTGTTTGCCATCGTCCAGAAGAACCAAGCGGACTGGCAGCCCTCCTGGT
CGGCGGACGAGTCCATCTTCGCTTTGGTAGTCGGCGGCGAGGCACTCTTC
TATGACCTCGGCGAGGGAGCGGAGAAGGGATTCGCCACCACATCGCGCAA
GATAGGAGGCAGTCGCGGCGGTATGCTGTCGCTGGGTCCCGGTAACTGCC
CCCCGTTCCTTGCGTTCTACACGCCGGGAGCCAAGGGCGCTCCGTCCATG
TGCAAGCTCTACAAGTACCCGGCGCTTGGCCAGAATCAGACCGTAGCCTG
CAAGAGCTTTTTCCAGGCGGATCGCGTCTAGATGTTGTGGAACAAGCGAG
GCAGCGGACTGCTTCTCCTATCCAGCACGGAAGTGGATATGAGCTGGTGC
CTCCTACTACCGGCAACATGCGGTGCACTTCATGGCAACCAATGACGACA
CCTGCTCAGTGTCCCCTCTCTAAGGAGGGACTGGGTGCATTGTGTCAAGT
GGCAGTCCTAATGCAACTGATTTTGGTAGTCGTATACTGCTTCATGCATC
CAAGGCTGCTCTCGTACAACTTCAAGTGCGACGTAGTCTTCGACTTCGAG
TGAGGGTCCACGCCAACTGTGACTACTTCATCCATTTGGCACCGTCATAG
C
UFO06013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7414-RE | 2602 | CG7414-RE | 74..1110 | 9..1051 | 4690 | 97.3 | Plus |
| CG7414-RD | 2319 | CG7414-RD | 74..1110 | 9..1051 | 4690 | 97.3 | Plus |
| CG7414-RC | 2827 | CG7414-RC | 299..1335 | 9..1051 | 4690 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21825250..21826246 | 49..1051 | 4225 | 97 | Plus |
| 3L | 28110227 | 3L | 21825038..21825077 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:57 has no hits.
UFO06013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:50 Download gff for
UFO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7414-RB | 213..1256 | 1..1051 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:02 Download gff for
UFO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7414-RC | 292..1335 | 1..1051 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:04 Download gff for
UFO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7414-RC | 292..1335 | 1..1051 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:04 Download gff for
UFO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21825031..21825077 | 1..48 | 91 | -> | Plus |
| 3L | 21825250..21826246 | 49..1051 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:02 Download gff for
UFO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21818131..21818177 | 1..48 | 91 | -> | Plus |
| arm_3L | 21818350..21819346 | 49..1051 | 97 | | Plus |
