UFO06014.5prime Sequence
1122 bp (1026 high quality bases) assembled on 2009-07-27
> UFO06014.5prime
CAGTCGACATGGCGGGTAAACGTGTTTTGGTCATCGATAATGGATCCTAC
GAATGCCGCGTGGGCTGGAGCGACTCCAAGGAGCCGGACTTGCGGTTCCG
CAATGTGCTGACCAAGCCGCGCAAGGATCGCAAAAAGGAAGCAGCTGCTT
CGGAGGGATCCGCATCGCAGACAACAGTGGAGCAATCTGCCGAGATCCAG
GTGGGCAATGACATCACCAACATCGAGGCGGTGCGTGCGCATCTGAAGAG
TCCATTCGAGCGGAATGTGATAACCAACTGGAATCACCAGGAGCAGATCT
TCGACTACATATTCACCAAGATGGGATTCGATGGACAGGACAAGATCGAC
CACCCAATCATCCTCACAGAGGCGCTGGCCAACCCCAACTTTTGCCGCCA
GCAGATGAACGAGCTGCTCTTCGAGTGCTACGGTATTCCGTCTGTATCCT
ACGGCATAGATGCGCTCTACAGCTGGAAGCATCATCAGCAAAAGCAGAAA
AATATATCCGATGCCCTGATCATTTCCTTTGGCTACAGCACCACCCACGT
CATTCCCGTGTTAGATGGCAAACTCCAGCTGGAGCATGTGCGTCGCCTGA
ATGTGGGTGGCTACCACATCATCACCTACCTCTTCCGGCTCATGCAAATG
AAGTATCCCGTCCATCTGAATGCCATCACCATCAGTCGTATGGAGAAATT
GGTCCATGAGCACTGCCACATTGCTGTTGATTACAAGGAGGAGCTGGTGC
AATGGGCCCAGATGGACTATTACGACGAGCACATAATGAAGATACAACTG
CCGTACAATGCGGTGACCGCCACTAACGCCATGCTAACCGCTGAGCAGAA
GCAGGAGAAGCGTCGCGAGCTGGCACATCGTCTGCTGGACATAAAAAAAA
ACCGGGAGCAGAGAAACTGCGCGAGGATGAGCAGCAGTTATTCGTCTACA
CAGCTGAGCAACTGTACGAGCAGAAAAAGCTGGACAAGTTTGAGCGAGCT
CTACAGCACAGCAGATTGGTACATTGGAGGACTTGGATTCCCTCATTGCA
CATAAACTCGCGTATTAGCGTGCCAAGAAGAGAGCTCGAATGCCGCGCCT
CCAACAAGCAGACAGGAAGCTG
UFO06014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp5-RB | 2080 | CG7940-RB | 83..1200 | 9..1117 | 5235 | 98.5 | Plus |
| Arp5-RA | 2320 | CG7940-RA | 323..1440 | 9..1117 | 5235 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18186373..18186964 | 504..1087 | 2585 | 98.1 | Plus |
| 3R | 32079331 | 3R | 18185820..18186314 | 9..503 | 2475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:09 has no hits.
UFO06014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:49 Download gff for
UFO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 294..1394 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:09 Download gff for
UFO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 315..1415 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:00 Download gff for
UFO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp5-RA | 315..1415 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:00 Download gff for
UFO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18185812..18186314 | 1..503 | 99 | -> | Plus |
| 3R | 18186373..18186970 | 504..1092 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:09 Download gff for
UFO06014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14011534..14012036 | 1..503 | 99 | -> | Plus |
| arm_3R | 14012095..14012692 | 504..1092 | 97 | | Plus |
