UFO06015.5prime Sequence
1104 bp (990 high quality bases) assembled on 2009-07-27
> UFO06015.5prime
CAGTCGATATGAAGCTTCTGTTGGTTCTTCCACTTCTGGTGGCTGTGGTC
TCTGGCCAGGGATTCGGAGGCGGTGGATTTGGAGGCGGATTTGGAGGTGG
ACTCGGAGGCGGATTTGGAGGTGGACTCGGAGGCTTGGGCAACAATCGAG
TGGGTGGAGCTTTACAAAATGTGGCCGGCGCCGTTCAGAATGCCGTGGGC
AACATTGCCAAGGCTGTGCCCAAGGTGCCGCTGCTCTCAAACGTCCAGGA
CTTTGGTGACTTCTTGAGCCAATCTGGAAAGACCTATCTCTCCGCCGCTG
ATCGCGCTCTTCATGAAGGTGCCTTCGCTTCCACCAAGAACCTGGTGGAA
GCCGGAAACGCAGCCTTTGCCCAAGGAGTGCACACCTTCAAGCAGGCCGT
GAACGCCTTCGCCGATCTGACCCACTCTGAGTTCCTTAGTCAATTGACCG
GTCTGAAGAGAAGTCCGGAGGCTAAGGCTCGAGCTGCTGCCAGTTTGAAG
TTGGTCAACCTGCCTGCGAAGCCCATCCCGGATGCCTTCGATTGGCGCGA
GCATGGCGGTGTCACACCAGTCAAATTCCAGGGTACCTGTGGCTCCTGTT
GGGCCTTTGCCACCACTGGTGCCATTGAGGGACACACCTTCCGCAAGACC
GGCAGCCTGCCCAATCTCTCTGAGCAGAATCTGGTCGACTGTGGTCCGGT
GGAGGACTTTGGCCTGAATGGCTGCGATGGTGGCTTCCAGGAGGCCGCAT
TCTGTTTCATCGATGAGGTGCAAAAGGGTGTGTCCCAGGAGGGGGCCTAT
CCCTACATTGACAACAAGGGCACGTGCAAGTACGATGGCAGCAAGTCCGG
AGCCACCCTCCAGGGATTCGCCGCTATTCCGCCCAAGACGAGGAGCAGCT
GAGACGTGGTGCCACTCTGGGACAGTTGCCTGTTCGGTGATGGTTTGAGA
CTCTTAGACTACGCCGGTGGCATCTATACGACGATGATGCAACAGGCGAG
CCGACCACTCCATCTGTCGTCGTACGATCGGAGAAGACAGGATACTGATC
GTCAGAACTCCTGGGGACGACACCCTGGGGCAAGCTACCTCCGCCTGCCT
CACG
UFO06015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4847-RE | 1308 | CG4847-RE | 35..1155 | 8..1101 | 4870 | 97.1 | Plus |
| CG4847-RD | 1501 | CG4847-RD | 228..1348 | 8..1101 | 4870 | 97.1 | Plus |
| CG4847-RC | 1313 | CG4847-RC | 40..1160 | 8..1101 | 4870 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17513050..17513561 | 476..978 | 2135 | 97.7 | Plus |
| 2R | 25286936 | 2R | 17512457..17512715 | 8..266 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 17512775..17512985 | 266..476 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:09 has no hits.
UFO06015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:48 Download gff for
UFO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RD | 215..1346 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:48 Download gff for
UFO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 32..1163 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:42 Download gff for
UFO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4847-RC | 32..1163 | 1..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:42 Download gff for
UFO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17512449..17512715 | 1..266 | 98 | -> | Plus |
| 2R | 17512776..17512984 | 267..475 | 100 | -> | Plus |
| 2R | 17513050..17513705 | 476..1104 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:48 Download gff for
UFO06015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13399954..13400220 | 1..266 | 98 | -> | Plus |
| arm_2R | 13400281..13400489 | 267..475 | 100 | -> | Plus |
| arm_2R | 13400555..13401210 | 476..1104 | 94 | | Plus |
