UFO06019.5prime Sequence
1090 bp (986 high quality bases) assembled on 2009-07-27
> UFO06019.5prime
CAGTCGACATGACTCTCAACCTGGGCGGCTGGATCCACAGCTTCACAGTG
ACGGACACCCAGGAGCACAAGGGCGGGTACACAATATACAAAATCACCTC
GATTGTCTTCCCAAGGTCGGTACCTCAAGCTCTGACCTGCCTGGTGGTGT
GGAAACGGTTCCACGATGTCAAGCGGCTGCATCGCGAGCTTAGCCGGCGC
CACAAGAGTCTCCAACTACCCGGCAAGTTGCCAGTGCCCACAGATAGCAC
ATATTTCAAGAGATTCGATGCGGCAGTCATCCAACGGCGTAAGGAGTACA
TCCTGCAATTATTAGACTTTGCAGCGCAGCATCCGGCGCTGTACAAGTGC
TCAACCTTCACACAGTTCTTCCAGGAGACACCCTCGCCAAACGGATCGCC
ACTTAAGAAGCTATATGTGGAGCGATCCCTGCGGCTGCAGACGGAAGACA
ATGGCTGCGGAAGTGGCGGTTCGGAAACAGGAACTTGCGCTGGTGCCATA
GCCGACATTTGCGATAAACTAGACTTGCCCTATGACCCACACGACGCGGG
GGGCATCACGCCTCTAGATCCGCGCTGTGATAAGGAGCAAACGAACAACG
AATCCCAGGCCAAAGAAACTGAAATCGAATTAGAAACGAAACAGGAGCCC
AAGACAGACGTAGCGCTGACCAAGAGGGATTATCTCCGCCTTCTGACGCC
CATGGCTTCCATAGAAAGCGACGACAGCGACTACATATATGAGGCGGCTC
TAGAGTTCAGTCATGCCGTCCAAGCGGAGGTTAACCTGGAGTATGCCGAA
GCCCACGAGAGGTACAAGCATGGTGTGGACCTGCTGCTCAATGGGGCCAA
GCAGGATAGCAGTGAGGAGCGTAGATTTATAGCCAAGCGAAGATAGCCAA
ATACTTGGCGCGGCTGAGAGATTCACGCCAATTTCCTGACACGATTGTCC
GACGAAGAAGCTGCAGTTCCAGCTCTCGCTGACACGAAAGACGGCGTAGC
GTGAGCAATTTGGGTGCCCCTGATCAGTGCCGCTACAAGGTGCTGCGATT
CTCCAGACGGTGTGATGCAGGTGCAGTGTTGACATTCCAG
UFO06019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7156-RA | 2619 | CG7156-RA | 102..1187 | 9..1079 | 5025 | 98.3 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 382..1110 | 366..1079 | 3240 | 97.4 | Plus |
| CG7156-RB | 2542 | CG7156-RB | 102..381 | 9..288 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18240911..18241900 | 1079..105 | 4250 | 97.9 | Minus |
| 3R | 32079331 | 3R | 18241961..18242058 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:15 has no hits.
UFO06019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:47 Download gff for
UFO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..1224 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:49 Download gff for
UFO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 123..1224 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:56 Download gff for
UFO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7156-RA | 98..1199 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:56 Download gff for
UFO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18240899..18241900 | 105..1088 | 97 | <- | Minus |
| 3R | 18241963..18242062 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:49 Download gff for
UFO06019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14066621..14067622 | 105..1088 | 97 | <- | Minus |
| arm_3R | 14067685..14067784 | 1..104 | 96 | | Minus |
