UFO06021.5prime Sequence
1088 bp (994 high quality bases) assembled on 2009-07-27
> UFO06021.5prime
CAGTCGACATGAGCGGACTCCTTCCGAAGTTGTGGCGCCAATGTGAAGCG
GGGCTAGTGCGCCGTATCAGCCAGGCACTGATTGGACCCGGCGCCAGTCA
GAGCCGGTGGACAGGGACCCGTCTCCTGGCCACCAGTGCGGATAAAAATC
CGGCCCCGGGGCTGCGGGAGCTGCCCCACTGCAATGTGGGCACCATTGGT
CACGTTGACCATGGTAAAACGACCCTGACCGCCGCCATTACCAGAATCCA
GTCACAGAAGGGTCTGGCGGAGTACCTGTCCTACGACCAGATTGATCGGG
CGCCCGAGGAGAAGGCGCGTGGCATAACTATAAATGCTTGCCATATTGGG
TATTCCACTACAGAACGCACCTACGCTCACACGGATTGCCCGGGTCATGC
GGACTACATAAAGAACATGATCTCGGGCGCCTCCCAAATGGATGGCGCCA
TTCTAGTGGTGGCTGCCACCGATGGTCAAATGCCCCAGACTCGCGAGCAC
CTTCTTCTGGCAAAACAAGTGGGCATCCAGCGCATCATAGTGTTTATAAA
CAAGGCCGATTTGGTGGACCAGGAGGTGCTGGAACTGGTCGAGATCGAGA
TGCGTGAGATGCTAAGTGATTTCGGCTTTGATGGCGTGAATAGCCCGGTA
ATTTGTGGCTCAGCGCTGCTGGCCCTTCGCGAAGATAAATCGGAGTTCGG
GGTTCCGTCAATTGAAAAGCTACTTGAGCAATGCGACTCTTACATACCAA
CGCCGCAGCGCGATATCTCGTCCCCATTTATCCTGCCAATAGACAATGCT
TTTACGGTACCCGGAAGGGGAACCGTGGTCGTGGGAACCATCAAAAGGGC
ACCATTCCCCGGGACGCGGATGCAGACCTACTGGGCTTCATCAGAACCTG
AGACAGCATCAGCGACATCAGATTATTCCGGGAGAGCGTGCCTCAGCACA
GGCTGGCGAGACGTCGCGCACTGCTGCGAGGTATAGATATCCGCCGTGGA
GCGGGATGCTACTGTGCGCAACCGCTCGAGGATTATCACCACTTGAGCTC
ATGTTATCTGCTATCGCGGCGGGATGTTCGGTGTCAGC
UFO06021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12736-RA | 1711 | CG12736-RA | 247..1326 | 9..1069 | 4845 | 97.7 | Plus |
| EfTuM-RB | 1776 | CG6050-RB | 427..867 | 173..613 | 325 | 72.6 | Plus |
| EfTuM-RA | 1720 | CG6050-RA | 371..811 | 173..613 | 325 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7509019..7509642 | 1024..412 | 2550 | 97.3 | Minus |
| 2R | 25286936 | 2R | 7509707..7510111 | 413..9 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 13508181..13508423 | 371..613 | 315 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:49 has no hits.
UFO06021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:46 Download gff for
UFO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 336..1423 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:17 Download gff for
UFO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 239..1326 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:30 Download gff for
UFO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12736-RA | 239..1326 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:30 Download gff for
UFO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7508966..7509640 | 414..1069 | 96 | <- | Minus |
| 2R | 7509707..7510118 | 1..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:17 Download gff for
UFO06021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3396471..3397145 | 414..1069 | 96 | <- | Minus |
| arm_2R | 3397212..3397623 | 1..413 | 99 | | Minus |
