UFO06024.5prime Sequence
1116 bp (1014 high quality bases) assembled on 2009-07-27
> UFO06024.5prime
CAGTCGACATGCACCACAAACAGCATCTGCATCTGCATCTGCAGCCCCCC
GCCCCAAACGCCACCCAAACACAGGCCCACGGACTTGGCCAGACTCCAAG
CCAGATCGCCAGATGCAGCCATAACCACAGCCCCAGTCTGGGCCTCAGCT
TTGGCGGCACCAAGAGCCAGCGACAGCTGTTTGGCGCACTCTTGGCCATG
TTCACGTTGGCGGCATTTGCGTCAACCACCAGTGGCGCTGTGACAGACTC
ACCCATCAAGATTATCCGGCTGCCGGCGCAGGCGCCAGTTATCCGCTATC
GCAGTGCAGATGCGGCGCCCAACTCATTGCTGATCAACTATCGTCAGGAT
GCGCGACCGGAGCTGTCGTCCACATTGATGCAGGCACCCGGAGCGGCGGC
AGCTGCCTTGGAGTCGCTGCTGCGCGAGGAGACGGAGCAACAGCAGCTGT
CACAGATGGGCAGACGGAATAGGGCTAGTAACACCGGCACCGGCAACTGT
CCTCGATCCTGTCCACCGAGCATCACCGTGGGAGCTGAGCCCGTGTGCGG
CAGCGATGGTCTGATCTATGCGAATATCTGCGAGCTGCGCAAGAAGACTT
GCTCCCGCAGTGGAGTGTCGCTGATCAAGGACGTGCGGGATGGCTGCGAG
AGGTCGAAGGGTTCGGACTGCAAGCACCGCTGCAGCACGGAGAAGGATCC
AGTGTGTGGTACAGACGGAAGGACCTATCTGAATCGCTGCATGCTGAGGG
TGCAATCGTGTCGCGTGGGATTGGCTGCAGTGAAGCTATCGCATGTGGGT
CCCTGCAGCAACACGAGTGCCGTGCGTGAGTCCTGTCCGGTTGACTGCAA
CAGTGCGCCGAAGGATGGACCAGTTTGCTCATCGGATGGCAATGTATACA
ACTCCACGTGCGAGATGAAGCTGAAGACGTGTGGACAGGTGTGGTGAAAA
CCAGCCGGAAGCACTGTCAGTCCACCACGAATGTGCAGGGATCCTGCTGC
TGTGCGAGCCACTTGCGATCAGAATGGCAGACTGTATGCAGTCGTGCAAG
ATGCGCCTCTTCATGCCGCAGCACGTCTTTGAGGTGTATCTACGGCAATG
TCCAAGAAGGTCACGA
UFO06024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32354-RA | 3251 | CG32354-RA | 1140..2227 | 9..1085 | 5035 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8417103..8417860 | 991..234 | 3695 | 99.7 | Minus |
| 3L | 28110227 | 3L | 8420840..8421066 | 235..9 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:28 has no hits.
UFO06024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:52 Download gff for
UFO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 207..1307 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:13 Download gff for
UFO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..2232 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:34 Download gff for
UFO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32354-RA | 1132..2232 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:34 Download gff for
UFO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8416995..8417859 | 235..1090 | 97 | <- | Minus |
| 3L | 8420841..8421074 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:13 Download gff for
UFO06024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8410095..8410959 | 235..1090 | 97 | <- | Minus |
| arm_3L | 8413941..8414174 | 1..234 | 98 | | Minus |
