UFO06027.5prime Sequence
1152 bp (1035 high quality bases) assembled on 2009-07-27
> UFO06027.5prime
CAGTCGACATGCCAGAGACGGAGCAGCAGCAGCACCCAGCACACTCACAT
CCTGAACTTAAGCCAGATCCACAGCCAGTGCCAGAACTGGAGCACCTCAC
CGACAATAGACCGAATCGCGTGCAGAACTTCTCCTTCGCCAGCAGCTATC
CCTACGCACCAGGACGCGTCTCGTCCAGCTCCAATTCGAACACCAACTAC
AGCTCCACCAACTACAACGCCGGCGGCTTCAACGTCCAGCGCTATCAGAG
TCCCTACAATTTCCAGCACGTGGTGACCAACGCATTCTCGGTGCTGCGCC
ATCAGCCCTCCGAGGAGCCCGAATTCGATTCCTATCCAACGCGACCCCAA
CAGGCCATCGTGCGTCCGATTAGACGTGAGGCGGGCATAGCTGATAACCG
TGATAATCATGTAGGGAATCCTCCACAGCGATCGCACTTCTCGCGCAGCA
ACCAGGAGGTGCGCAGCTTCGCCGATGAGCTGAGCCAGAAGCTGCGCTTC
CTGGCGCCGGAGGAGCAGAACTACGGCGGTCGCCAGAGCGCCAATTCCGG
TGCCTGGATGGATCCAGCGATGTCGCAGCGACCACGATTCGAGACCACAG
TGCCGCAGGGCATCTTCCTGCCGCCTCCGCATGAGGTCCAAATGATACCG
GCCACCATGCTGAGGAGGCATGTCTACGCCTACTCCTCATATCCCATGAT
CCTCCAAGGGTATCTCACCAAGGAGACCGGCAGTGAGAGCAAGGAGCAGA
AGGTGACCGCCACCCGGCTGAACGGTTTGCGTGCCACGGCGGCAGTGGCG
GCGGCCACAGCTGCGGCCTCCAAATCCTCCCGTAACGATACGCAATCCCT
CGCCGTGGACTCCACATCACCAAGGCTCAGTTCAACAACAACTGCAACAG
CGTCGCTCCACCAGCAACAACAACAACAACAGCAGCAGCAACATCAGCGA
CAAGAGACCCGTCGTCCCGCCGCCGGAACCCTACAAGAACGTCATGTACG
ACCGTCGCGTCATAAAGGCAGCAACTTCGGCACGCCTCTCTGGTGACGAT
GTGATCCCTCGACAAGCCGCCGAATGAGGCGTCGCATTGTGCGCAAACGA
CGAATGCAAGCCGAATCAAGAAATGTTCTGGGCAACCGCCCCCGGGTCAG
GC
UFO06027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32392-RB | 2507 | CG32392-RB | 224..1377 | 8..1145 | 5280 | 98.2 | Plus |
| CG32392-RA | 1657 | CG32392-RA | 325..527 | 957..1145 | 575 | 90.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6759941..6760891 | 956..8 | 4655 | 99.8 | Minus |
| 3L | 28110227 | 3L | 6758020..6758112 | 1045..955 | 365 | 97.8 | Minus |
Blast to na_te.dros performed 2014-11-28 22:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2838 | 22..233 | 120 | 54.9 | Plus |
UFO06027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:43 Download gff for
UFO06027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 205..1324 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:47 Download gff for
UFO06027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 217..1336 | 1..1108 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:09 Download gff for
UFO06027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32392-RB | 217..1336 | 1..1108 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:09 Download gff for
UFO06027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6758020..6758110 | 957..1045 | 97 | <- | Minus |
| 3L | 6759941..6760895 | 1..956 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:47 Download gff for
UFO06027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6751120..6751210 | 957..1045 | 97 | <- | Minus |
| arm_3L | 6753041..6753995 | 1..956 | 99 | | Minus |
