UFO06028.5prime Sequence
1141 bp (1052 high quality bases) assembled on 2009-07-27
> UFO06028.5prime
CCGTCGACATGTCCTTTCGCTCGAGATCAAGAACCCAGGCGCCCCTGTCC
AGTCGGCGGCGATCGTTGTCCTCCAGTTCGCGAATGGCTCCATCAAGTGG
TGGTTCCGGGGCCTATAACTACAACGGAAGTAGCTATAGCAGCTCCGGCA
GCACTGGTCGTCCCCTGAGCACGGGCTACTTTCCCAGCAGCAGTAGCGCC
TCCAGTTACCAGAGTCCCTATGCCAGTGTGTACAGCTCGAGGGAGAGCTT
GTACGGCGGAGGAGGTGCTGGTCGGAGTTCTTATGGCAGCGGTGGTGGTG
GATACGACAGTTCCAGGTACAATCCCAGTTCCTATTCCTCGGCGGGATCT
TCGTACTCCACAAGCGATCGATATGTCAGCCCCTATTCGAGTAGTTATGA
TAAGGGTGTGACCACCGCTTCGCTGACCTTCAAGTCGCCCGGTTTGAGTT
CGTCCAATTCGTTCAAGAGTTCTCGTTTACTGAAGACCAAATCACTGTCA
GCATCAAATAGCAGCCTGAATGGTGCCTATGGTGGTCCATCCTCGAATGG
GGTAACCAGTGCCGGAGCCACTGTGGCCGCCATCGCAGCCACAAGGAGCA
ACTCTTTGCGGGAACAGGAGCGCAAGTCTCGCAATCGCACGCGGTCGAAG
AGTGCGGCACAGAGATCCATTAGTGCTTCCTCAGAGAAGAGTGAAGGATA
TGAAAGTGGCAGTGAGCGGACATCCCGTTCCCGGCTGGGCAGCACCGCGA
GTACGGCCACCACCAGCGAGTCAAAGAGCTCCAGCAGCAATGACAAGACG
GAGAATGGCGATGGCATTGACTACAAGGCGCTCTGGGAAGCGGAAAATTG
GAGAACGATAAGCTGAGCAGATGCTCAAGCAGATGACGATGAGCCGTCCA
GACACGTGCAACACTCGAGAGATTCGCCAATGCCACAACGAAAATTCACT
ATCTGAACTTGAGAAACGCGAAGAAGAGCTATGGACGCAAGCTTTCCGAG
TTGGAAGAAGAGCTCAAGCTATTGCAGAAGCTAAGACTGAGAACGATCGT
CTGCGGCCCGAGAATCGGCCCTACGCGGGTGTCTCCAAGCTGACCAACCT
CGGCTCAAAGTCAGCTGTAGAGCCAAGCCAGCTTCTAGACA
UFO06028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RE | 1906 | CG32156-RE | 116..1238 | 5..1117 | 5245 | 98.5 | Plus |
| Mbs-RF | 2404 | CG32156-RF | 116..1137 | 5..1019 | 4905 | 99.1 | Plus |
| Mbs-RQ | 4482 | CG32156-RQ | 3392..3814 | 705..1117 | 1760 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16076229..16076648 | 285..704 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 16075484..16075765 | 5..286 | 1395 | 99.6 | Plus |
| 3L | 28110227 | 3L | 16076982..16077124 | 705..847 | 715 | 100 | Plus |
| 3L | 28110227 | 3L | 16077730..16077809 | 941..1018 | 300 | 97.5 | Plus |
| 3L | 28110227 | 3L | 16077192..16077282 | 847..934 | 290 | 95.6 | Plus |
| 3L | 28110227 | 3L | 16078818..16078921 | 1017..1117 | 235 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:33 has no hits.
UFO06028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:42 Download gff for
UFO06028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 112..1243 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:26 Download gff for
UFO06028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 113..1244 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:04 Download gff for
UFO06028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RE | 113..1244 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:04 Download gff for
UFO06028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16075481..16075764 | 1..285 | 98 | -> | Plus |
| 3L | 16076230..16076648 | 286..704 | 100 | -> | Plus |
| 3L | 16076982..16077124 | 705..846 | 99 | -> | Plus |
| 3L | 16077192..16077282 | 847..934 | 95 | -> | Plus |
| 3L | 16077723..16077809 | 935..1018 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:26 Download gff for
UFO06028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16070823..16070909 | 935..1018 | 96 | -> | Plus |
| arm_3L | 16068581..16068864 | 1..285 | 98 | -> | Plus |
| arm_3L | 16069330..16069748 | 286..704 | 100 | -> | Plus |
| arm_3L | 16070082..16070224 | 705..846 | 99 | -> | Plus |
| arm_3L | 16070292..16070382 | 847..934 | 95 | -> | Plus |
