UFO06029.5prime Sequence
1138 bp (1023 high quality bases) assembled on 2009-07-27
> UFO06029.5prime
CAGTCGACATGATTCAGTCGGGGGTCCACAAAAAGAAGCCAAGGATTCGG
AATCGCCAGCGCAACAAGATCAACCAGGTGCCACAGGATCAAGGGGAATC
TCCAGACGCAATTGCGTCTTCACTCAAAAGTAATGGCTCAAAAGCGGCAA
ATGGTGTAGAAAGTAAACCTCCGGTGGAAAAGCCCTTACTTACAAGTGGA
AATTCTCTGCTTGAATCATTATCAAAAATTGGTCAAGTGGAAAATCCGCA
AGAGAACGATACAATCCGGCTGATACAGCAACTGTTACGTAGGAAATTAT
TGGCCAAAAATAGTGCTGTGCCATCCAGCGAAAATAAGCCATCAACTGAT
CCGGTCAAAATAGTTACCCAACCAAAGGAAATCAAAAGTGAAGAAAAGAA
ACCAAAGATTTCGAGTACCTCGGTTACTCCAAAACTCAAAACAGAAGCCA
AGGCATCTGGAATTTCAAAAGAAGAGGAAATAAATGATCTACTCAAATGC
TTGGGCAGCAAACTGCCAAAGGGATCTGGTGAATCCCCAGCAGCCGCGTT
ATTCAGCAATCTTGGAAAGCTTTTCAGCCAAGCGCCGCCCAGCGATGTCG
AGTCATCCGATGAGGAAGTGGAGGAGTATGTGGAGTACATCTATAAGCCA
AGGCAATATTTTATGGCCTCACTGTGCAATTTCTGCAAGTCGGATCTGTG
CGGCCAGAATCGGATACCCTGCTCCCGCTGTGGACTGAGCTACTACTGCA
GCAGTGGGCACATGAAAGACGACCAGGAGCACCGCCAGCTGTGCTACGCC
CTGCGCCAGACGGTGGACCGCAATGGTCACGAGATGTTCTACAAGTGCGG
CGACTTCAGTGACGAACAGTTCCGTTCCTTCCGGATCGTGTGCATTCGCC
AGGGTGGAGGAAGGAGATGATCGTCAGCTCAGCGCAACGGAGAGAGAGTT
GCTCCTATTTCCACTGATCTGCGCCGACTCAAAGTGCCGGGAGCATCGCT
TTAACGTCTATCCATGGTGCGGGGGATGTGGCGAGGTGGCCTTTCTGCAA
GGAAAGCCGGAACACCGAGCAGGACACGCCAAGTGGGGGGTGAATCTATC
GATTTCAGCCCTTCTCATGTTTCAGGAACGTCGCGCAT
UFO06029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13458-RA | 2188 | CG13458-RA | 212..1339 | 7..1129 | 5185 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15113768..15114284 | 7..523 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 15115038..15115281 | 825..1069 | 860 | 96.4 | Plus |
| 3L | 28110227 | 3L | 15114343..15114501 | 522..680 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 15114823..15114969 | 681..827 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:06 has no hits.
UFO06029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:41 Download gff for
UFO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..1352 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:45 Download gff for
UFO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..1352 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:41 Download gff for
UFO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13458-RA | 206..1352 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:41 Download gff for
UFO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15115039..15115360 | 826..1138 | 92 | | Plus |
| 3L | 15113762..15114283 | 1..522 | 99 | -> | Plus |
| 3L | 15114344..15114501 | 523..680 | 100 | -> | Plus |
| 3L | 15114823..15114967 | 681..825 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:45 Download gff for
UFO06029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15106862..15107383 | 1..522 | 99 | -> | Plus |
| arm_3L | 15107444..15107601 | 523..680 | 100 | -> | Plus |
| arm_3L | 15107923..15108067 | 681..825 | 100 | -> | Plus |
| arm_3L | 15108139..15108460 | 826..1138 | 92 | | Plus |
