UFO06030.5prime Sequence
1035 bp (717 high quality bases) assembled on 2009-07-27
> UFO06030.5prime
CAATCCACATGCTGCGTGCCATGATGGCCTACATCTGGCCAAAGGAGGAT
CCACTGGTGCAAAAGCGGGTGGGTATTTCCCTGGGTCTGTTGGCTGGCTC
CAAGCTGCTGACCGTCTGTGTCCCCTTCTTGTTCAAAGGAGCTGTGGACA
CGATGACAACGCTGAACATGGACACTGCCCCGGATGCGGTCCTCTCCGCA
GCCACCGCACTGATGTTGGGATATGGCATTGCTAGAGCCAGTGCGGCGGG
CTTTAATGAGTTGCGGAATGCAATGTTTGCCAAGGTGGCCCACCACTCGA
TCCGAAAGATCGCCAGCAATGTGTTCCTGCATCTGCACAACCTGGATCTG
GCCTTCCACCTGAACAAACAAACTGGAGCACTGTCAAAGACCATCGATCG
AGGATCGAGGGGCATTAACTTTGTGCTCTCCGCCATGGTCTTCAACATTG
TGCCCACTATCTTTGAGCTGGCCCTCGTGTCCAGTATCCTGGGAGTGAAG
TGTGGCCTGGCCTTCACTGGTGTCAGCATGGGCTGCATTGGCATATACAC
TGCCTACACTCTGAGTGTGACCCAGTGGCGCACCCAGTTCCGTGTATTTA
TGAACCACGCGGAGAACGAGGCCGGCAACAAGGCCGTAGACTCGCTGATC
AACTACGAGACGGTGAAGTACTTCAACAACGAAAAGTACGAGGCGGGTTG
CTACAACGAGGTGCTGAAGAAGTATGAGGCGGCCAGCTTGAGACTAGCTC
CAGTCTCGCTCTGCTCAACTCTGGCCAGAACGCCATTTTCAGCAGCGCAC
TGAGTCTGATTATGGTATTGGCCGCCAAGGAGATTGCCCAAGGCAACATG
ACGGTTGGAGATTTGGTGATGGTCACGCCCTGCTCATCCAGCTCTCGATC
CCCCTCGGATTTCTGGGCAGTGTTATCGTGAGATGCGACAGGCTTTGCTG
ACATGCAGCCATGCTCACGATGATGAACGTGGACAGTACATCAGACGCGC
ATGCCCAGCCCTGTTCGTGAACTCCACTAACTCAT
UFO06030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ABCB7-RB | 2387 | CG7955-RB | 397..1435 | 9..1035 | 4680 | 97.4 | Plus |
| ABCB7-RA | 2743 | CG7955-RA | 499..1537 | 9..1035 | 4680 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1621317..1622087 | 223..988 | 3425 | 97.8 | Plus |
| 3L | 28110227 | 3L | 1621102..1621257 | 67..222 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 1620984..1621043 | 9..68 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:35 has no hits.
UFO06030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:40 Download gff for
UFO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7955-RC | 776..1821 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:08 Download gff for
UFO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 492..1537 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:32 Download gff for
UFO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ABCB7-RA | 492..1537 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:32 Download gff for
UFO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1620977..1621042 | 1..67 | 92 | -> | Plus |
| 3L | 1621103..1621257 | 68..222 | 100 | -> | Plus |
| 3L | 1621317..1622141 | 223..1035 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:08 Download gff for
UFO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1620977..1621042 | 1..67 | 92 | -> | Plus |
| arm_3L | 1621103..1621257 | 68..222 | 100 | -> | Plus |
| arm_3L | 1621317..1622141 | 223..1035 | 96 | | Plus |
