UFO06031.5prime Sequence
1068 bp (794 high quality bases) assembled on 2009-07-27
> UFO06031.5prime
CAGTCGAACATGTTTTGCAAAGTTGAAAGCACATTGAATTGGGAGAGCCG
TCAGGAATTTCTAGATACGGAATCAGCGAAAATGGACTTAATGCAATTGG
ACGTCCAATTAATTGATAATCTAATGAATTACGCCGAAAAAATAGATGAA
AAGGCTTCCCAACTAAAGAGACTATCCCAGGAACTAAGACAGCCTTTGCA
CTCTGCGAAAGGTAGAGAAGAGGAGTACTTGGGCAATCCTCTCCACAGTT
TTCCACTCATTCGACACATGTACCAGGATTGGCGGTACCTGGAAGAGTTT
ATGAAGAAACCAGTGGGAGAAGAGGAAATCCAATTTCTAAGAAGAAAGTT
ACCGGAACTGCCCTGGCAGGTGGACACCGAGGAAGCCAGCGTCTCAATCT
TCAGAATAGCTGAAACCTATGGAATGATGCCCTGGGATATGGCCAACGGT
CTCATCGACAATGTTCGGTTCAACTCCACACTGCCAGCTCTGGATTGTTT
TGAAGTCGCAAAGATGTACTTCAAGTGGGGCTACTTCAAGCAGGCATTAC
AGTGGATAACCATCAGCAAAGCTCGGATGAAAGAGGAGTACTCCGGGGTT
TATGAGGTGCTGGGAATGAATCGCCAGGATGTGGCCCTGCTGCAGGCTCG
CTGTTTAGTGGAATTGGACCGGAGAGATGAAGCCCATGAGGTACTTCTGG
ATCAACCTGATCTCACAGACAATTCGATTAGCTTGCTGGACCAATTCAAG
GCCAATCCTTACGAGGCAATAGACAGTTCGCCCAAGTTGGGTGAATGCTA
CAAGAGACTGTGCCGTTCCTCGTTCTCTCCGAACCCTTCAAACTCCGCTG
TCGCTACACAGCACCACCTCTGCCTTCCTGATCCTGGCTCCCCTCAAAAT
GGAGGAGATCTCTCTGGAGCCCATATAGTGGTGTACCATGACATCCTGCC
GGGATAGATATCCAGCAGCTAGTAACCTTGGCGGAGCCGCTACTGAACCC
CCCGAAATGTCTGGACGGATATAGATGAGGCCAGTACCAGTTACCCCCCC
CCGCTCGGTGGACACTTT
UFO06031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaNE3-RA | 1627 | CG31017-RA | 8..1073 | 10..1068 | 4760 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30605076..30605414 | 667..1001 | 1345 | 95.9 | Plus |
| 3R | 32079331 | 3R | 30604827..30605020 | 474..667 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 30604188..30604348 | 10..170 | 775 | 98.8 | Plus |
| 3R | 32079331 | 3R | 30604615..30604767 | 321..473 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 30604405..30604558 | 169..322 | 755 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:21 has no hits.
UFO06031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:39 Download gff for
UFO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..999 | 10..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:09 Download gff for
UFO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..999 | 10..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:30 Download gff for
UFO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaNE3-RA | 8..999 | 10..997 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:30 Download gff for
UFO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30604188..30604348 | 10..170 | 98 | -> | Plus |
| 3R | 30604407..30604558 | 171..322 | 99 | -> | Plus |
| 3R | 30604617..30604767 | 323..473 | 100 | -> | Plus |
| 3R | 30604827..30605020 | 474..667 | 100 | -> | Plus |
| 3R | 30605077..30605410 | 668..997 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:09 Download gff for
UFO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26430339..26430489 | 323..473 | 100 | -> | Plus |
| arm_3R | 26430129..26430280 | 171..322 | 99 | -> | Plus |
| arm_3R | 26429910..26430070 | 10..170 | 98 | -> | Plus |
| arm_3R | 26430549..26430742 | 474..667 | 100 | -> | Plus |
| arm_3R | 26430799..26431132 | 668..997 | 96 | == | Plus |
